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AT3G05150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 29751 Blast hits to 29100 proteins in 2018 species: Archae - 566; Bacteria - 13294; Metazoa - 5300; Fungi - 6650; Plants - 2634; Viruses - 0; Other Eukaryotes - 1307 (source: NCBI BLink).
Protein Annotations
BioGrid:5012eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC009177
EMBL:AK228841EMBL:CP002686EnsemblPlants:AT3G05150EnsemblPlants:AT3G05150.1
entrez:819677GeneID:819677Genevisible:Q0WQ63GO:GO:0005634
GO:GO:0008643GO:GO:0016021GO:GO:0022891Gramene:AT3G05150.1
hmmpanther:PTHR23500hmmpanther:PTHR23500:SF113HOGENOM:HOG000202868InParanoid:Q0WQ63
InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846
iPTMnet:Q0WQ63KEGG:ath:AT3G05150MINT:MINT-8069317OMA:LEMVGRH
PaxDb:Q0WQ63Pfam:PF00083Pfam:Q0WQ63Pfscan:PS50850
PhylomeDB:Q0WQ63PRIDE:Q0WQ63PRINTS:PR00171PRO:PR:Q0WQ63
PROSITE:PS00216PROSITE:PS50850ProteinModelPortal:Q0WQ63Proteomes:UP000006548
Reactome:R-ATH-428790RefSeq:NP_187166.2scanprosite:PS00216SMR:Q0WQ63
STRING:3702.AT3G05150.1SUPFAM:SSF103473TAIR:AT3G05150TIGRfam:TIGR00879
TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.40723UniProt:Q0WQ63
Coordinates (TAIR10) chr3:+:1440216..1443361
Molecular Weight (calculated) 51027.40 Da
IEP (calculated) 6.90
GRAVY (calculated) 0.66
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: METRKDDMEK RNDKSEPLLL PENGSDVSEE ASWMVYLSTI IAVCGSYEFG TCVGYSAPTQ FGIMEELNLS YSQFSVFGSI LNMGAVLGAI TSGKISDFIG
101: RKGAMRLSSV ISAIGWLIIY LAKGDVPLDF GRFLTGYGCG TLSFVVPVFI AEISPRKLRG ALATLNQLFI VIGLASMFLI GAVVNWRTLA LTGVAPCVVL
201: FFGTWFIPES PRWLEMVGRH SDFEIALQKL RGPQANITRE AGEIQEYLAS LAHLPKATLM DLIDKKNIRF VIVGVGLMFF QQFVGINGVI FYAQQIFVSA
301: GASPTLGSIL YSIEQVVLTA LGATLLIDRL GRRPLLMASA VGMLIGCLLI GNSFLLKAHG LALDIIPALA VSGVLVYIGS FSIGMGAIPW VIMSEIFPIN
401: LKGTAGGLVT VVNWLSSWLV SFTFNFLMIW SPHGTFYVYG GVCVLAIIFI AKLVPETKGR TLEEIQAMMM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)