AT3G05150.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 29751 Blast hits to 29100 proteins in 2018 species: Archae - 566; Bacteria - 13294; Metazoa - 5300; Fungi - 6650; Plants - 2634; Viruses - 0; Other Eukaryotes - 1307 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:1440216..1443361 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51027.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 470 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: METRKDDMEK RNDKSEPLLL PENGSDVSEE ASWMVYLSTI IAVCGSYEFG TCVGYSAPTQ FGIMEELNLS YSQFSVFGSI LNMGAVLGAI TSGKISDFIG 101: RKGAMRLSSV ISAIGWLIIY LAKGDVPLDF GRFLTGYGCG TLSFVVPVFI AEISPRKLRG ALATLNQLFI VIGLASMFLI GAVVNWRTLA LTGVAPCVVL 201: FFGTWFIPES PRWLEMVGRH SDFEIALQKL RGPQANITRE AGEIQEYLAS LAHLPKATLM DLIDKKNIRF VIVGVGLMFF QQFVGINGVI FYAQQIFVSA 301: GASPTLGSIL YSIEQVVLTA LGATLLIDRL GRRPLLMASA VGMLIGCLLI GNSFLLKAHG LALDIIPALA VSGVLVYIGS FSIGMGAIPW VIMSEIFPIN 401: LKGTAGGLVT VVNWLSSWLV SFTFNFLMIW SPHGTFYVYG GVCVLAIIFI AKLVPETKGR TLEEIQAMMM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)