suba logo
AT5G58150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 14506206
AmiGO : plasma membrane 17317660
AmiGO : vacuole 15539469
SwissProt : plasma membrane 16381842
TAIR : vacuole 15539469
TAIR : plasma membrane 14506206
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G24230.1); Has 123029 Blast hits to 76063 proteins in 2552 species: Archae - 68; Bacteria - 12544; Metazoa - 35496; Fungi - 3406; Plants - 61900; Viruses - 119; Other Eukaryotes - 9496 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G58150-MONOMERBioGrid:21171eggNOG:COG4886eggNOG:ENOG410JXQV
EMBL:AB019228EMBL:AY091097EMBL:AY123035EMBL:CP002688
EMBL:FJ708804EnsemblPlants:AT5G58150EnsemblPlants:AT5G58150.1entrez:835927
Gene3D:3.80.10.10GeneID:835927Genevisible:Q9LVN2GO:GO:0004672
GO:GO:0005524GO:GO:0005773GO:GO:0005886GO:GO:0016021
Gramene:AT5G58150.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF16HOGENOM:HOG000116551
InParanoid:Q9LVN2IntAct:Q9LVN2InterPro:IPR000719InterPro:IPR001245
InterPro:IPR001611InterPro:IPR003591InterPro:IPR011009InterPro:IPR032675
iPTMnet:Q9LVN2KEGG:ath:AT5G58150OMA:MIDKPLMPaxDb:Q9LVN2
Pfam:PF00560Pfam:PF07714Pfam:PF13516Pfam:PF13855
Pfam:Q9LVN2Pfscan:PS50011Pfscan:PS51450PhylomeDB:Q9LVN2
PRIDE:Q9LVN2PRO:PR:Q9LVN2PROSITE:PS50011PROSITE:PS51450
ProteinModelPortal:Q9LVN2Proteomes:UP000006548RefSeq:NP_200623.1SMART:SM00369
SMR:Q9LVN2STRING:3702.AT5G58150.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT5G58150TMHMM:TMhelixUniGene:At.22044UniGene:At.72500
UniProt:Q9LVN2
Coordinates (TAIR10) chr5:-:23530216..23532573
Molecular Weight (calculated) 86615.70 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.04
Length 785 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLSLWGSLL FFSFFVKHLT SLDPNTDAYH LSSFFSAMRL PNSPQAHTFS SLCSWPGVVV CDSSENVLHI SASGLDLSGS IPDNTIGKMS KLQTLDLSGN
101: KITSLPSDLW SLSLLESLNL SSNRISEPLP SNIGNFMSLH TLDLSFNSIS GKIPAAISNL VNLTTLKLHN NDFQFGVPPE LVHCRSLLSI DLSSNRLNES
201: LPVGFGSAFP LLKSLNLSRN LFQGSLIGVL HENVETVDLS ENRFDGHILQ LIPGHKHNWS SLIHLDLSDN SFVGHIFNGL SSAHKLGHLN LACNRFRAQE
301: FPEIGKLSAL HYLNLSRTNL TNIIPREISR LSHLKVLDLS SNNLTGHVPM LSVKNIEVLD LSLNKLDGDI PRPLLEKLAM MQRFNFSFNN LTFCNPNFSQ
401: ETIQRSFINI RNNCPFAAKP IITKGKKVNK KNTGLKIGLG LAISMAFLLI GLLLILVALR VRRKSRTWAT KLAINNTEPN SPDQHDSTTD IKQATQIPVV
501: MIDKPLMKMT LADLKAATFN FDRGTMLWEG KSGPTYGAVL PGGFRAALKV IPSGTTLTDT EVSIAFERLA RINHPNLFPL CGYCIATEQR IAIYEDLDMV
601: NLQSLLHNNG DDSAPWRLRH KIALGTARAL AFLHHGCIPP MVHGEVKAAT ILLDSSQEPR LADFGLVKLL DEQFPGSESL DGYTPPEQER NASPTLESDV
701: YSFGVVLLEL VSGKKPEGDL VNWVRGLVRQ GQGLRAIDPT MQETVPEDEI AEAVKIGYLC TADLPWKRPT MQQVVGLLKD ISPNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)