AT5G62270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:25012227..25014007 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43942.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||
| Length | 383 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYNLSRIIYR FSSVSLNPST RASGFLLENA SSKILQSATN RAFSAKSGSD GVGGDDNGWN ISTGGSFGGT GSADLDWDNK SMWSTGLTKE HFDGVSVGRQ 101: KNAANPSSDN TPSDSGDVMS KLGPKEVALV NEMNEYDDLL KEIEQDNRQG RAFVDGIKQR MMEISVLLKQ VKEPGARGSY LKDSEKTEMY RLHKENPEVY 201: TIERLAKDYR IMRQRVHAIL FLKEDEEEEE RKLGRPLDDS VDRLLDEYPE FFISHDREFH VASLNYKPDF KVMPEGWDGT IKDMDEVHYE ISKKEDDMLY 301: EEFVRRFEFN KMKWRGEVMC HKYSRRRSSE GWKITVEKLG AKGKRGAGGG WKFMSLPDGS SRPLNEMEKV YVKRETPLRR RKI |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)