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AT3G24210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G04780.1); Has 792 Blast hits to 708 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 393; Fungi - 3; Plants - 340; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JRTNeggNOG:ENOG410XNMSEMBL:CP002686EnsemblPlants:AT3G24210
EnsemblPlants:AT3G24210.1entrez:822007Gene3D:1.25.40.20GeneID:822007
Gramene:AT3G24210.1hmmpanther:PTHR12447hmmpanther:PTHR12447:SF8InParanoid:F4J6I7
InterPro:IPR002110InterPro:IPR020683InterPro:IPR021832KEGG:ath:AT3G24210
OMA:CKSNIFRPANTHER:PTHR12447PaxDb:F4J6I7Pfam:PF11904
Pfam:PF13857Pfscan:PS50088Pfscan:PS50297PRIDE:F4J6I7
PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:F4J6I7Proteomes:UP000006548
RefSeq:NP_189063.2SMR:F4J6I7STRING:3702.AT3G24210.1SUPFAM:SSF48403
TAIR:AT3G24210UniGene:At.37573UniProt:F4J6I7
Coordinates (TAIR10) chr3:-:8753712..8755627
Molecular Weight (calculated) 67830.80 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.52
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MENVDVSKYI HSSVHKAVAS KDYVGLRAIL SSLPKPKDPC EIQTEAASLS EEAKSDTISA VIDRRDVPSR DTPLHLAVKL CDSTSVEMLM VAGADWTLQN
101: EDGWNALQEA VCSRQEAIAM IIVRHYQPLA WAKWCRRLPR LIATMSKMKD FYLEMSFHFE SSVVPFVSKV APSDTYKVWK VGSNLRADMT MAGFDGFKIQ
201: RSDQSILFLG DGSEDGEVAR GSLYMVNHKD KEVMNALDGA CGVPSEEEVR KEVAAMCKSN IFRPGIDVTQ AVLSPQTNWR RQEKSEMVGP WKAKVYEMNN
301: VVVSVKSRKV PGSLAVEGGD DDICDVLTDE EQKQLEDALK LDLPDFPNVN GENGFIVHHQ EDHVEANKKA EKKGWLGGWR KKETKQEKQI QYAPPRSSLC
401: VNEKVSNLLG ESNQIKPGRH SVDNEHYRKP KALVSDKTRH ESEYKKGLRP VLWLSPNFPL QTEELLPLLD ILANKVKAIR RLRELLTTKL PSGTFPVKVA
501: IPVVPTIKVL VTFTKFEEIE PVDEFKTPLS SPTSSGYESP AAATTDFTNS SSSSSWFRRS RSNKDGGSSK SKTLQDPFAI PTGYTWVSLE SKKRKPKKGG
601: KKTEQVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)