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AT2G14820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.735
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
Computational
Description (TAIR10)
NAKED PINS IN YUC MUTANTS 2 (NPY2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypophysis, root meristem; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67440.1); Has 895 Blast hits to 867 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 877; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGZ6eggNOG:ENOG410YBGREMBL:AC004705EMBL:CP002685
EMBL:DQ069815EnsemblPlants:AT2G14820EnsemblPlants:AT2G14820.1entrez:815970
GeneID:815970GO:GO:0009958GO:GO:0016567GO:GO:0071944
Gramene:AT2G14820.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF4HOGENOM:HOG000239180
InParanoid:O80970InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356
InterPro:IPR029960KEGG:ath:AT2G14820ncoils:CoilOMA:MHENIEK
PANTHER:PTHR32370:SF4PaxDb:O80970Pfam:O80970Pfam:PF00651
Pfam:PF03000Pfscan:PS51649PhylomeDB:O80970PIR:T02594
PRIDE:O80970PRO:PR:O80970PROSITE:PS51649ProteinModelPortal:O80970
Proteomes:UP000006548RefSeq:NP_179089.1STRING:3702.AT2G14820.1SUPFAM:SSF54695
TAIR:AT2G14820tair10-symbols:NPY2UniGene:At.52744UniPathway:UPA00143
UniProt:O80970
Coordinates (TAIR10) chr2:+:6358864..6361300
Molecular Weight (calculated) 70197.80 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.23
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFMKIGSKL DSFKTDGNNV RYVENELASD ISVDVEGSRF CLHKFPLLSK CACLQKLLSS TDKNNIDDID ISGIPGGPTA FETCAKFCYG MTVTLSAYNV
101: VATRCAAEYL GMHETVEKGN LIYKIDVFLS SSLFRSWKDS IIVLQTTKPF LPLSEDLKLV SLCIDAIATK ACVDVSHVEW SYTYNKKKLA EENNGADSIK
201: ARDVPHDWWV EDLCELEIDY YKRVIMNIKT KCILGGEVIG EALKAYGYRR LSGFNKGVME QGDLVKHKTI IETLVWLLPA EKNSVSCGFL LKLLKAVTMV
301: NSGEVVKEQL VRRIGQQLEE ASMAELLIKS HQGSETLYDV DLVQKIVMEF MRRDKNSEIE VQDDEDGFEV QEVRKLPGIL SEASKLMVAK VIDSYLTEIA
401: KDPNLPASKF IDVAESVTSI PRPAHDALYR AIDMFLKEHP GITKGEKKRM CKLMDCRKLS VEACMHAVQN DRLPLRVVVQ VLFFEQVRAA ASSGSSTPDL
501: PRGMGRELRS CGTYGSSRSV PTVMEDEWEA VATEEEMRAL KSEIAALKLQ EESGRKSMDR AGVTAISKIR SLIMSKKIFG KKVQLQSKGG GEKNNGGGGG
601: GSDSSESLGS MNAAEETAKT ATPSRNLTRR VSVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)