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AT5G25890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 28
Curator
Summary (TAIR10)
encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.
Computational
Description (TAIR10)
indole-3-acetic acid inducible 28 (IAA28); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, regulation of translation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 18 (TAIR:AT1G51950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:17933eggNOG:ENOG410JSZ4eggNOG:ENOG41108C7EMBL:AC005405EMBL:AF149413EMBL:AF149816EMBL:BT000427
EMBL:BT002175EMBL:CP002688EnsemblPlants:AT5G25890EnsemblPlants:AT5G25890.1entrez:832658ExpressionAtlas:Q9XFM0GeneID:832658
Genevisible:Q9XFM0GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0009734GO:GO:0010102
Gramene:AT5G25890.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF2HOGENOM:HOG000238261InParanoid:Q9XFM0IntAct:Q9XFM0InterPro:IPR000270
InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT5G25890KO:K14484ncoils:CoilOMA:DLNRQYTPANTHER:PTHR31734
PaxDb:Q9XFM0Pfam:PF02309Pfam:Q9XFM0Pfscan:PS51745PhylomeDB:Q9XFM0PIR:T52143PRO:PR:Q9XFM0
PROSITE:PS51745ProteinModelPortal:Q9XFM0Proteomes:UP000006548RefSeq:NP_568478.1SMR:Q9XFM0STRING:3702.AT5G25890.1SUPFAM:SSF54277
TAIR:AT5G25890tair10-symbols:IAA28tair10-symbols:IAR2UniGene:At.11439UniProt:Q2VWA1UniProt:Q9XFM0
Coordinates (TAIR10) chr5:+:9033480..9034554
Molecular Weight (calculated) 20207.00 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.85
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)