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AT5G16600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 43
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB43).
Computational
Description (TAIR10)
myb domain protein 43 (MYB43); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 20 (TAIR:AT1G66230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB008270EMBL:AF175990
EMBL:AY519625EMBL:BT002762EMBL:CP002688EnsemblPlants:AT5G16600
EnsemblPlants:AT5G16600.1entrez:831522Gene3D:1.10.10.60GeneID:831522
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0009737GO:GO:2000652Gramene:AT5G16600.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF498HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G16600KO:K09422ncoils:Coil
OMA:LDQDSWTPfam:PF00249Pfscan:PS51294PhylomeDB:Q9SPG7
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_197163.1SMART:SM00717
SMR:Q9SPG7STRING:3702.AT5G16600.1SUPFAM:SSF46689TAIR:AT5G16600
tair10-symbols:AtMYB43tair10-symbols:MYB43UniGene:At.8851UniProt:Q9SPG7
Coordinates (TAIR10) chr5:+:5438291..5440214
Molecular Weight (calculated) 37115.50 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.78
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRQPCCDKV GLKKGPWTIE EDKKLINFIL TNGHCCWRAL PKLSGLLRCG KSCRLRWINY LRPDLKRGLL SEYEEQKVIN LHAQLGNRWS KIASHLPGRT
101: DNEIKNHWNT HIKKKLRKMG IDPLTHKPLS EQEASQQAQG RKKSLVPHDD KNPKQDQQTK DEQEQHQLEQ ALEKNNTSVS GDGFCIDEVP LLNPHEILID
201: ISSSHHHHSN DDNVNINTSK FTSPSSSSSS TSSCISSVVP GDEFSKFFDE MEILDLKWLS SDDSLGDDIS KDGKFNNSTV DTMNLWDIND LSSLDMFMNE
301: HDDGFIGNGN GCSRMVLDQD SWTFDLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)