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AT1G79180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 63
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 63 (MYB63); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 58 (TAIR:AT1G16490.1); Has 9415 Blast hits to 8435 proteins in 508 species: Archae - 0; Bacteria - 6; Metazoa - 906; Fungi - 547; Plants - 5986; Viruses - 6; Other Eukaryotes - 1964 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AK175344EMBL:AY519572
EMBL:BT033125EMBL:CP002684EnsemblPlants:AT1G79180EnsemblPlants:AT1G79180.1
entrez:844259Gene3D:1.10.10.60GeneID:844259GO:GO:0003677
GO:GO:0003700GO:GO:0009751GO:GO:0009753GO:GO:0045893
GO:GO:2000652Gramene:AT1G79180.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF462
HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT1G79180KO:K09422OMA:NYGNKWSPfam:PF00249
Pfscan:PS51294PhylomeDB:Q6R0A6PROSITE:PS51294Proteomes:UP000006548
RefSeq:NP_178039.1SMART:SM00717SMR:Q6R0A6STRING:3702.AT1G79180.1
SUPFAM:SSF46689TAIR:AT1G79180tair10-symbols:ATMYB63tair10-symbols:MYB63
UniGene:At.10915UniProt:Q6R0A6
Coordinates (TAIR10) chr1:+:29786509..29787589
Molecular Weight (calculated) 33781.70 Da
IEP (calculated) 4.80
GRAVY (calculated) -1.10
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS PEEDIKLISF IQKFGHENWR SLPKQSGLLR CGKSCRLRWI NYLRPDLKRG NFTSEEEETI IKLHHNYGNK WSKIASQLPG
101: RTDNEIKNVW HTHLKKRLAQ SSGTADEPAS PCSSDSVSRG KDDKSSHVED SLNRETNHRN ELSTSMSSGG SNQQDDPKID ELRFEYIEEA YSEFNDIIIQ
201: EVDKPDLLEI PFDSDPDIWS FLDTSNSFQQ STANENSSGS RATTEEESDE DEVKKWFKHL ESELGLEEDD NQQQYKEEES SSSSLLKNYE LMIH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)