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AT3G23620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal RNA processing Brix domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal RNA processing Brix domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 435 Blast hits to 425 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 138; Plants - 54; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
BioGrid:7274eggNOG:COG5106eggNOG:KOG3031EMBL:AB023036EMBL:AY070410EMBL:AY086550EMBL:AY122939
EMBL:CP002686EnsemblPlants:AT3G23620EnsemblPlants:AT3G23620.1entrez:821942GeneID:821942Genevisible:Q9LUG5GO:GO:0005730
Gramene:AT3G23620.1hmmpanther:PTHR12728hmmpanther:PTHR12728:SF0HOGENOM:HOG000157782InParanoid:Q9LUG5IntAct:Q9LUG5InterPro:IPR007109
KEGG:ath:AT3G23620KO:K14847OMA:GQKTPRIPaxDb:Q9LUG5Pfam:PF04427Pfam:Q9LUG5Pfscan:PS50833
PhylomeDB:Q9LUG5PRIDE:Q9LUG5PRO:PR:Q9LUG5PROSITE:PS50833ProteinModelPortal:Q9LUG5Proteomes:UP000006548RefSeq:NP_566734.1
SMART:SM00879SMR:Q9LUG5STRING:3702.AT3G23620.1TAIR:AT3G23620UniGene:At.28364UniProt:Q9LUG5
Coordinates (TAIR10) chr3:+:8480147..8481873
Molecular Weight (calculated) 35729.70 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.62
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)