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AT3G15540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 19
Curator
Summary (TAIR10)
Primary auxin-responsive gene. Involved in the regulation stamen filaments development.
Computational
Description (TAIR10)
indole-3-acetic acid inducible 19 (IAA19); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: phototropism, gravitropism, response to auxin stimulus, response to brassinosteroid stimulus, stamen filament development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid 6 (TAIR:AT1G52830.1); Has 1781 Blast hits to 1780 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1780; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:6127DIP:DIP-34946NeggNOG:ENOG410J00CeggNOG:ENOG4111813EMBL:AB022218EMBL:AC024081EMBL:AY088753
EMBL:CP002686EMBL:U49075EnsemblPlants:AT3G15540EnsemblPlants:AT3G15540.1entrez:820793ExpressionAtlas:O24409GeneID:820793
Genevisible:O24409GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0009734GO:GO:0080086
Gramene:AT3G15540.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF12HOGENOM:HOG000238261InParanoid:O24409IntAct:O24409InterPro:IPR000270
InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT3G15540KO:K14484MINT:MINT-8060566OMA:NSDQCESPANTHER:PTHR31734
PaxDb:O24409Pfam:O24409Pfam:PF02309Pfscan:PS51745PhylomeDB:O24409PRIDE:O24409PRO:PR:O24409
PROSITE:PS51745ProteinModelPortal:O24409Proteomes:UP000006548RefSeq:NP_188173.1SMR:O24409STRING:3702.AT3G15540.1SUPFAM:SSF54277
TAIR:AT3G15540tair10-symbols:IAA19tair10-symbols:MSG2UniGene:At.10479UniProt:O24409UniProt:Q2VWA2
Coordinates (TAIR10) chr3:+:5264100..5265378
Molecular Weight (calculated) 21495.70 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.45
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)