AT4G10080.1::SUBA5

AT4G10080.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
nucleus 0.938
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT5G20480.1:None: PMID:24833385 (2014): AT4G19110.1:None: PMID:24833385 (2014): AT5G15500.1:None: PMID:24833385 (2014): AT2G46330.1:None: PMID:24833385 (2014): AT4G05380.1:None: PMID:24833385 (2014): AT4G05370.1:None: PMID:24833385 (2014): AT5G55630.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT1G64230.1:None: PMID:24833385 (2014): AT5G07180.1:None: PMID:24833385 (2014): AT3G20320.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT1G43790.1:None: PMID:24833385 (2014): AT3G12110.1:None: PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT5G16530.1:None: PMID:24833385 (2014): AT4G11960.1:None: PMID:24833385 (2014): AT5G52420.1:None: PMID:24833385 (2014): AT2G01175.1:None: PMID:24833385 (2014): AT1G29060.1:None: PMID:24833385 (2014): AT2G44690.1:None: PMID:24833385 (2014): AT5G59650.1:None: PMID:24833385 (2014): AT4G20790.1:None: PMID:24833385 (2014): AT1G21240.1:None: PMID:24833385 (2014): AT2G28990.1:None: PMID:24833385 (2014): AT3G54360.1:None: PMID:24833385 (2014): AT2G26180.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT4G13530.1 nucleus [7.02]
AT5G54540.1 mitochondrion [5.1]
AT1G15340.1 nucleus [5.06]
AT1G01240.1 mitochondrion [4.73]
AT3G07310.1 plastid [4.61]
AT4G03030.1 plastid [4.53]
AT1G13190.1 nucleus [4.51]
AT2G35680.1 cytosol [4.51]
AT1G43700.1 nucleus [4.43]
AT1G72820.1 mitochondrion [4.39]

AT4G05380.1 cytosol
AT3G12110.1 cytosol
AT5G52420.1 endoplasmic reticulum
AT3G12180.1 endoplasmic reticulum
AT5G16530.1 endoplasmic reticulum
AT4G05370.1 extracellular
AT1G43790.1 extracellular
AT2G01175.1 extracellular
AT2G46330.1 extracellular
AT4G37680.1 golgi
AT1G29060.1 golgi
AT1G17280.1 golgi
AT2G26180.1 nucleus
AT3G54360.1 nucleus
AT4G19110.1 nucleus
AT5G20480.1 plasma membrane
AT5G15500.1 plasma membrane
AT5G07180.1 plasma membrane
AT5G59650.1 plasma membrane
AT4G20790.1 plasma membrane
AT2G44690.1 plasma membrane
AT2G28990.1 plasma membrane
AT1G64230.1 plasma membrane
AT1G21240.1 plasma membrane
AT4G11960.1 plastid
AT3G20320.1 plastid
AT5G55630.1 vacuole

Description (TAIR10)

protein_coding :

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 120 Blast hits to 114 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410J0QI	eggNOG:ENOG410YQ6I	EMBL:AK117210	EMBL:AK117430
EMBL:CP002687	EnsemblPlants:AT4G10080	EnsemblPlants:AT4G10080.1	entrez:826599
GeneID:826599	GO:GO:0016021	Gramene:AT4G10080.1	hmmpanther:PTHR33646
hmmpanther:PTHR33646:SF3	HOGENOM:HOG000140922	KEGG:ath:AT4G10080	OMA:ETVWWKM
PhylomeDB:Q8GSF0	Proteomes:UP000006548	RefSeq:NP_192746.2	STRING:3702.AT4G10080.1
TAIR:AT4G10080	TMHMM:TMhelix	UniGene:At.19917	UniProt:Q8GSF0

Coordinates (TAIR10)

chr4:-:6300454..6302560

Molecular Weight (calculated)

35343.90 Da

IEP (calculated)

4.22

GRAVY (calculated)

-0.33

Length

325 amino acids

Sequence (TAIR10)
(BLAST)

001: MDDWELLHHG SDTESTDSIT SETKLESSSV IDDGMILSDH FSATDRVIES GYFDSFRVDY GSECLNPGEV SVDSGLDQFS VSQSGDDCVR NEFGVYDSET
101: GILGDGEVRL SDFEAANEKY VESEAATELT GGTVSHYETE NLEEFVDGRH GENESGVEEP IEDSSKLCSD LGGNELVSRD SGVVNGEKEV VSDSVVASSE
201: VIEGSGGDTV EVGGVSSGGE GKSRETVWWK MPFVLLKYSV FRIGPVWSVS MAAAVMGLVL LGRRLYNMKK KAQRFHLKVT IDDKKASRVM SQAARLNEVF
301: TEVRRVPVIR PALPSPGAWP VLSLR