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AT3G20320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : trigalactosyldiacylglycerol2
Curator
Summary (TAIR10)
Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
Computational
Description (TAIR10)
trigalactosyldiacylglycerol2 (TGD2); FUNCTIONS IN: phospholipid binding, lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mammalian cell entry related (InterPro:IPR003399); Has 660 Blast hits to 610 proteins in 215 species: Archae - 0; Bacteria - 436; Metazoa - 0; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
BioGrid:6908eggNOG:COG1463eggNOG:ENOG410IHC5EMBL:AB024036
EMBL:AY048230EMBL:AY085722EMBL:AY094020EMBL:CP002686
EnsemblPlants:AT3G20320EnsemblPlants:AT3G20320.1entrez:821576GeneID:821576
Genevisible:Q9LTR2GO:GO:0005319GO:GO:0005543GO:GO:0006869
GO:GO:0009507GO:GO:0009536GO:GO:0009706GO:GO:0009941
GO:GO:0016020GO:GO:0016021GO:GO:0032365hmmpanther:PTHR34675
hmmpanther:PTHR34675:SF1HOGENOM:HOG000238696InParanoid:Q9LTR2InterPro:IPR003399
KEGG:ath:AT3G20320OMA:KEGLIICPaxDb:Q9LTR2Pfam:PF02470
Pfam:Q9LTR2PhylomeDB:Q9LTR2PRIDE:Q9LTR2PRO:PR:Q9LTR2
Proteomes:UP000006548RefSeq:NP_566659.1RefSeq:NP_974345.1STRING:3702.AT3G20320.1
SwissPalm:Q9LTR2TAIR:AT3G20320tair10-symbols:TGD2TCDB:3.A.1.27.2
TMHMM:TMhelixUniGene:At.8172UniProt:Q9LTR2
Coordinates (TAIR10) chr3:-:7087657..7089640
Molecular Weight (calculated) 41632.80 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.04
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGNPVIQVP SSLMPSSSMI ACPRVSPNGV PYLPPKPRTR HLVVRAASNS DAAHGQPSSD GGKNPLTVVL DVPRNIWRQT LKPLSDFGFG KRSIWEGGVG
101: LFIVSGATLL ALSWAWLRGF QMRSKFRKYQ TVFELSHASG ICTGTPVRIR GVTVGTIIRV NPSLKNIEAV AEIEDDKIII PRNSLVEVNQ SGLLMETMID
201: IMPRNPIPEP SVGPLHPECG KEGLIVCDRQ TIKGVQGVSL DELVGIFTRI GREVEAIGVA NTYSLAERAA SVIEEARPLL KKIQAMAEDA QPLLSEFRDS
301: GLLKEVECLT RSLTQASDDL RKVNSSIMTP ENTELIQKSI YTLVYTLKNV ESISSDILGF TGDEATRKNL KLLIKSLSRL L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)