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AT4G28640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indole-3-acetic acid inducible 11
Curator
Summary (TAIR10)
Auxin induced gene, IAA11 (IAA11).
Computational
Description (TAIR10)
indole-3-acetic acid inducible 11 (IAA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.2); Has 1971 Blast hits to 1970 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:14269eggNOG:ENOG410IVBZeggNOG:ENOG410YK71EMBL:AF332397EMBL:AK118377EMBL:AL161573EMBL:AY099670
EMBL:BT000261EMBL:CP002687EMBL:U18413EnsemblPlants:AT4G28640EnsemblPlants:AT4G28640.1entrez:828982ExpressionAtlas:Q38829
GeneID:828982Genevisible:Q38829GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009734hmmpanther:PTHR31734
hmmpanther:PTHR31734:SF6HOGENOM:HOG000238261InParanoid:Q38829IntAct:Q38829InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389
PANTHER:PTHR31734PaxDb:Q38829Pfam:PF02309Pfam:Q38829Pfscan:PS51745PhylomeDB:Q38829PIR:S58497
PRIDE:Q38829PRO:PR:Q38829PROSITE:PS51745ProteinModelPortal:Q38829Proteomes:UP000006548RefSeq:NP_194593.1SMR:Q38829
STRING:3702.AT4G28640.2SUPFAM:SSF54277TAIR:AT4G28640tair10-symbols:IAA11UniGene:At.25401UniProt:Q38829
Coordinates (TAIR10) chr4:+:14142288..14143755
Molecular Weight (calculated) 26517.50 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.35
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KAQMIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)