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AT3G23050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indole-3-acetic acid 7
Curator
Summary (TAIR10)
Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
Computational
Description (TAIR10)
indole-3-acetic acid 7 (IAA7); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1682 Blast hits to 1681 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1681; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:7211DIP:DIP-33345NDNASU:821879eggNOG:ENOG410IK8ZeggNOG:ENOG410YEC3EMBL:AB026655EMBL:AF332395
EMBL:AY054651EMBL:AY072461EMBL:AY087765EMBL:CP002686EMBL:U18409EnsemblPlants:AT3G23050EnsemblPlants:AT3G23050.1
entrez:821879EvolutionaryTrace:Q38825ExpressionAtlas:Q38825GeneID:821879Genevisible:Q38825GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009414GO:GO:0009611GO:GO:0009630GO:GO:0009733GO:GO:0009734GO:GO:0009753
hmmpanther:PTHR31734hmmpanther:PTHR31734:SF30HOGENOM:HOG000238261InParanoid:Q38825IntAct:Q38825InterPro:IPR000270InterPro:IPR003311
InterPro:IPR033389iPTMnet:Q38825KEGG:ath:AT3G23050KO:K14484OMA:QSNKEGSPANTHER:PTHR31734PaxDb:Q38825
PDB:2P1NPDB:2P1OPDB:2P1QPDBsum:2P1NPDBsum:2P1OPDBsum:2P1QPfam:PF02309
Pfam:Q38825Pfscan:PS51745PhylomeDB:Q38825PIR:S58494PRIDE:Q38825PRO:PR:Q38825PROSITE:PS51745
ProteinModelPortal:Q38825Proteomes:UP000006548RefSeq:NP_188945.1SMR:Q38825STRING:3702.AT3G23050.1SUPFAM:SSF54277TAIR:AT3G23050
tair10-symbols:AXR2tair10-symbols:IAA7UniGene:At.22260UniGene:At.67783UniProt:Q38825
Coordinates (TAIR10) chr3:+:8194768..8196716
Molecular Weight (calculated) 26382.80 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.42
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ
101: KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD
201: WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)