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AT2G06850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15610358 (2005): extracellular region
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28611809 (2017): cytosol
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24393051 (2015): extracellular region
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 4
Curator
Summary (TAIR10)
endoxyloglucan transferase (EXGT-A1) gene
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 4 (XTH4); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to auxin stimulus, response to mechanical stimulus, response to low light intensity stimulus, unidimensional cell growth; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2146 Blast hits to 2126 proteins in 304 species: Archae - 0; Bacteria - 263; Metazoa - 0; Fungi - 414; Plants - 1383; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G06850-MONOMERBioGrid:640CAZy:GH16EC:2.4.1.207
eggNOG:ENOG410JVP5eggNOG:ENOG41105R2EMBL:AC005561EMBL:AF163819
EMBL:AF386928EMBL:AY054547EMBL:AY056201EMBL:AY059873
EMBL:AY064672EMBL:AY085465EMBL:AY114644EMBL:CP002685
EMBL:D16454EnsemblPlants:AT2G06850EnsemblPlants:AT2G06850.1entrez:815247
Gene3D:2.60.120.200GeneID:815247Genevisible:Q39099GO:GO:0004553
GO:GO:0005576GO:GO:0005618GO:GO:0005737GO:GO:0009505
GO:GO:0009506GO:GO:0009507GO:GO:0009612GO:GO:0009645
GO:GO:0009733GO:GO:0009826GO:GO:0010411GO:GO:0016020
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555
Gramene:AT2G06850.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF15HOGENOM:HOG000236368
InParanoid:Q39099InterPro:IPR000757InterPro:IPR008263InterPro:IPR008264
InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT2G06850
KO:K08235OMA:CQASVEAPaxDb:Q39099Pfam:PF00722
Pfam:PF06955Pfam:Q39099Pfscan:PS51762PhylomeDB:Q39099
PIR:C49539PIRSF:PIRSF005604PRIDE:Q39099PRINTS:PR00737
PRO:PR:Q39099PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q39099
Proteomes:UP000006548RefSeq:NP_178708.1scanprosite:PS01034SMR:Q39099
STRING:3702.AT2G06850.1SUPFAM:SSF49899TAIR:AT2G06850tair10-symbols:EXGT-A1
tair10-symbols:EXTtair10-symbols:XTH4TMHMM:TMhelixUniGene:At.24328
UniGene:At.74042UniProt:Q39099
Coordinates (TAIR10) chr2:+:2763619..2765490
Molecular Weight (calculated) 34292.80 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.41
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVSSSPWAL MALFLMVSST MVMAIPPRKA IDVPFGRNYV PTWAFDHQKQ FNGGSELQLI LDKYTGTGFQ SKGSYLFGHF SMHIKLPAGD TAGVVTAFYL
101: SSTNNEHDEI DFEFLGNRTG QPAILQTNVF TGGKGNREQR IYLWFDPSKA YHTYSILWNM YQIVFFVDNI PIRTFKNAKD LGVRFPFNQP MKLYSSLWNA
201: DDWATRGGLE KTNWANAPFV ASYKGFHIDG CQASVEAKYC ATQGRMWWDQ KEFRDLDAEQ WRRLKWVRMK WTIYNYCTDR TRFPVMPAEC KRDRDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)