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AT1G54060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 6B-interacting protein 1-like 1
Curator
Summary (TAIR10)
Member of the trihelix DNA binding protein family. Nuclear localized. Involved in repressing seed maturation genes during seed germination and seedling development.
Computational
Description (TAIR10)
6B-interacting protein 1-like 1 (ASIL1); FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, regulation of shoot development, regulation of seed germination, regulation of transcription; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G14180.1); Has 1288 Blast hits to 1162 proteins in 176 species: Archae - 0; Bacteria - 142; Metazoa - 401; Fungi - 73; Plants - 538; Viruses - 7; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
BioGrid:27069eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AC006577EMBL:AF360325EMBL:AY056333EMBL:AY084772
EMBL:CP002684EnsemblPlants:AT1G54060EnsemblPlants:AT1G54060.1entrez:841844GeneID:841844Genevisible:Q9SYG2GO:GO:0003700
GO:GO:0005634GO:GO:0005730GO:GO:0006351GO:GO:0006355GO:GO:0009733GO:GO:0009793GO:GO:0010029
GO:GO:0010431GO:GO:0044212GO:GO:0048831Gramene:AT1G54060.1hmmpanther:PTHR31307hmmpanther:PTHR31307:SF4HOGENOM:HOG000238159
InParanoid:Q9SYG2IntAct:Q9SYG2iPTMnet:Q9SYG2KEGG:ath:AT1G54060ncoils:CoilOMA:DGPSKWVPaxDb:Q9SYG2
Pfam:PF13837Pfam:Q9SYG2PhylomeDB:Q9SYG2PIR:C96581PRIDE:Q9SYG2PRO:PR:Q9SYG2ProteinModelPortal:Q9SYG2
Proteomes:UP000006548RefSeq:NP_564648.1STRING:3702.AT1G54060.1TAIR:AT1G54060tair10-symbols:ASIL1UniGene:At.19741UniProt:Q9SYG2
Coordinates (TAIR10) chr1:+:20180972..20182123
Molecular Weight (calculated) 41733.90 Da
IEP (calculated) 9.06
GRAVY (calculated) -0.94
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDDEIQSI PSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPQPGLSSQS PSMNALALVV HTPSVTGGGG SGNRNGRGGG GGSGGGGGGR DDCWSEEATK
101: VLIEAWGDRF SEPGKGTLKQ QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES LIGGTTTFIA SSKASEKAPM
201: GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA
301: ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ RGERRIVDDD DDRNGKNNGN VSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)