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AT5G62030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.649
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : diphthamide synthesis DPH2 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
diphthamide synthesis DPH2 family protein; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DHP1 (InterPro:IPR016435), Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT3G59630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1736eggNOG:KOG2648EMBL:AK227098EMBL:AY091063
EMBL:AY117320EMBL:CP002688EnsemblPlants:AT5G62030EnsemblPlants:AT5G62030.1
entrez:836323GeneID:836323GO:GO:0017183Gramene:AT5G62030.1
hmmpanther:PTHR10762hmmpanther:PTHR10762:SF1IntAct:Q8RWW3InterPro:IPR016435
KEGG:ath:AT5G62030KO:K07561OMA:TIWRIREPANTHER:PTHR10762
Pfam:PF01866Proteomes:UP000006548RefSeq:NP_201009.1SMR:Q8RWW3
STRING:3702.AT5G62030.1TAIR:AT5G62030TIGRfam:TIGR00322TIGRFAMs:TIGR00322
UniGene:At.29074UniPathway:UPA00559UniProt:Q8RWW3
Coordinates (TAIR10) chr5:+:24919046..24920407
Molecular Weight (calculated) 50343.70 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.15
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSDPNNGK TNKPKQPPKR FIKNQIPDSI LGDASLNAAI SILPSIYHFE VHKCVWRIKT SNAKRIALQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SACALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDVKNIILA GTIQFTSAIR AVKPELEKQG FNVLIPQSKP
201: LSAGEVLGCT APKVKTVEDC KDQVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RMRAIARARE AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMMEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI RGWWENDSSS RVNSSSGCCK EDKETSCACK
401: NENVKDDKKD NDGALDGDYP MDYYAQEGGE WNSSYLKKSS RPIRRNPLPS SVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)