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AT3G20240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mitochondrial substrate carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G32400.1); Has 23519 Blast hits to 13479 proteins in 453 species: Archae - 0; Bacteria - 4; Metazoa - 9210; Fungi - 7314; Plants - 4467; Viruses - 0; Other Eukaryotes - 2524 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZRF1eggNOG:KOG0752EMBL:AK227419EMBL:AP000383
EMBL:AY085067EMBL:BT005998EMBL:CP002686EnsemblPlants:AT3G20240
EnsemblPlants:AT3G20240.1entrez:821568Gene3D:1.50.40.10GeneID:821568
Genevisible:Q9LJX5GO:GO:0005743GO:GO:0016021GO:GO:0055085
Gramene:AT3G20240.1hmmpanther:PTHR24089hmmpanther:PTHR24089:SF359HOGENOM:HOG000165726
InParanoid:Q9LJX5InterPro:IPR002067InterPro:IPR018108InterPro:IPR023395
KEGG:ath:AT3G20240OMA:YRTDGIRPaxDb:Q9LJX5Pfam:PF00153
Pfam:Q9LJX5Pfscan:PS50920PhylomeDB:Q9LJX5PRIDE:Q9LJX5
PRINTS:PR00926PRO:PR:Q9LJX5PROSITE:PS50920ProteinModelPortal:Q9LJX5
Proteomes:UP000006548RefSeq:NP_188659.1SMR:Q9LJX5STRING:3702.AT3G20240.1
SUPFAM:0048588SUPFAM:SSF103506TAIR:AT3G20240TMHMM:TMhelix
UniGene:At.38269UniProt:Q9LJX5
Coordinates (TAIR10) chr3:+:7057192..7058716
Molecular Weight (calculated) 37905.80 Da
IEP (calculated) 9.89
GRAVY (calculated) 0.21
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMVVPKEGL VVMDKESVSS ASSDSHLRLQ PHFPDFTIPV KDFFKSREAR EFLSGALAGA MTKAVLAPLE TIRTRMIVGV GSRSIPGSFL EVVQKQGWQG
101: LWAGNEINMI RIIPTQAIEL GTFEWVKRAM TSAQVKLKKI EDAKIEIGDF SFSPSISWIS PVAVAGASAG IASTLVCHPL EVLKDRLTVS PEIYPSLSLA
201: IPRIFRADGI RGFYAGLGPT LVGMLPYSTC YYFMYDKMKT SYCKSKNKKA LSRPEMLVLG ALAGLTASTI SFPLEVARKR LMVGALKGEC PPNMAAAIAE
301: VVKKEGVMGL YRGWGASCLK VMPSSGITWV FYEAWKDILL AANTKPLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)