AT3G20240.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Mitochondrial substrate carrier family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, transporter activity; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT4G32400.1); Has 23519 Blast hits to 13479 proteins in 453 species: Archae - 0; Bacteria - 4; Metazoa - 9210; Fungi - 7314; Plants - 4467; Viruses - 0; Other Eukaryotes - 2524 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:7057192..7058716 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37905.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.89 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 348 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAMVVPKEGL VVMDKESVSS ASSDSHLRLQ PHFPDFTIPV KDFFKSREAR EFLSGALAGA MTKAVLAPLE TIRTRMIVGV GSRSIPGSFL EVVQKQGWQG 101: LWAGNEINMI RIIPTQAIEL GTFEWVKRAM TSAQVKLKKI EDAKIEIGDF SFSPSISWIS PVAVAGASAG IASTLVCHPL EVLKDRLTVS PEIYPSLSLA 201: IPRIFRADGI RGFYAGLGPT LVGMLPYSTC YYFMYDKMKT SYCKSKNKKA LSRPEMLVLG ALAGLTASTI SFPLEVARKR LMVGALKGEC PPNMAAAIAE 301: VVKKEGVMGL YRGWGASCLK VMPSSGITWV FYEAWKDILL AANTKPLI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)