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AT5G22100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA cyclase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-208-MONOMEReggNOG:COG0430eggNOG:KOG3980EMBL:AL589883
EMBL:BT002059EMBL:CP002688EnsemblPlants:AT5G22100EnsemblPlants:AT5G22100.1
entrez:832271ExpressionAtlas:Q9C578Gene3D:3.65.10.20GeneID:832271
GO:GO:0003824GO:GO:0005730GO:GO:0042254Gramene:AT5G22100.1
HOGENOM:HOG000157670InterPro:IPR013791InterPro:IPR013792InterPro:IPR016443
InterPro:IPR020719InterPro:IPR023797KEGG:ath:AT5G22100KO:K11108
OMA:VMFSPGLPaxDb:Q9C578Pfam:PF01137Pfam:PF05189
Pfam:Q9C578PhylomeDB:Q9C578PRIDE:Q9C578PRO:PR:Q9C578
PROSITE:PS01287ProteinModelPortal:Q9C578Proteomes:UP000006548RefSeq:NP_680196.1
scanprosite:PS01287SMR:Q9C578STRING:3702.AT5G22100.1SUPFAM:SSF55205
TAIR:AT5G22100TIGRfam:TIGR03400TIGRFAMs:TIGR03400UniGene:At.44338
UniGene:At.45633UniProt:Q67XN9UniProt:Q9C578
Coordinates (TAIR10) chr5:+:7329015..7330718
Molecular Weight (calculated) 40876.50 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.09
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMMKKMKGS QSFRQRLLLS TLSSTPISID EIRADETIPG LRPHEVNLLR LLEIVTDDAV VDINETGTRL KYKPGTIVGG KNLVHSCSLS RSIGYYLEPL
101: LLLGLFGKKP LSIRLKGITN DPRDASVDTF RSTTLNIIKR FGVPAEDLEL KIEARGVAPN GGGEVLLTVP NIKTLSAVHW VEEGMVKKIR GTTFSTRVTS
201: DFEHSMRFAA RGIFNNLLPD VHIFQDHRAG AQAGKSPGYG ISLAAETTTG CFISADTTVS CERPDETGEL DVEKKERSPA EDTGVEVASW LLQEIEKGGV
301: VDSTHQGLLF LLCALSEQDV SKVRVGTLSP YAVETLRNIK EFLGVKFAIK PDPLTGTVIL KCTGSGLINL SRKLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)