AT3G21060.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 5627 Blast hits to 3991 proteins in 353 species: Archae - 10; Bacteria - 1286; Metazoa - 1502; Fungi - 1496; Plants - 488; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:7377822..7379942 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60144.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 547 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNAPIIDPLQ GDFPEVIEEY LEHGVIKCVA FNHRGSLLAA GCADGGCVIW DFETRGIAKE IRDNDCSAAI TSVSWSKYGH RLLVSAADKS LTLWDVSTGE 101: KIARTILQQT PLQARLNPGL SSPSLCLACP LSSAPMIVDF DIDCTTLLPV SVPEMPDVLA PPQRSKCPES NPPFSPAAAC FNKCGDLVYI GNSKGEILIV 201: DYKSVRVLAL VSASGAAPVK NIVFSRNGQY LLTNSHDRTI RIYENLLPAK NVLKSLEDLG KNIDGLDGIE KMKTVGSKCL TLFREFQDSV TKMHWKAPCF 301: SGDGEWVVGG SACKGEHKIY IWDRAGHLVK ILEGPKEALI DLAWHPVHPI IVSVSLAGLV YIWAKDYTEN WSAFAPDFKE LEENEEYVER EDEFDLIPET 401: EKVKVLDVNE DEEVDIDTVE KDAFSDSDMS VEELRYLPAE PIPDTNDQQD NLVESIKLIE GQISASPASE EAGQNGHHAS SPQAEEMGET RGKRKRKPSE 501: KAMELQAEKA KPLKGSGKTV RAKNRAAFDQ ETDDSINGGD DDDDAYY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)