suba logo
AT3G21060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 5627 Blast hits to 3991 proteins in 353 species: Archae - 10; Bacteria - 1286; Metazoa - 1502; Fungi - 1496; Plants - 488; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTA2eggNOG:KOG1273EMBL:AK317567EMBL:AP000604
EMBL:BT004200EMBL:BT021105EMBL:CP002686EnsemblPlants:AT3G21060
EnsemblPlants:AT3G21060.1entrez:821658Gene3D:2.130.10.10GeneID:821658
Genevisible:Q5E915GO:GO:0005634GO:GO:0010228GO:GO:0048188
Gramene:AT3G21060.1hmmpanther:PTHR22847hmmpanther:PTHR22847:SF461HOGENOM:HOG000204856
InParanoid:Q5E915InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775KEGG:ath:AT3G21060KO:K14961OMA:CIIWDFE
PaxDb:Q5E915Pfam:PF00400Pfam:Q5E915Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q5E915PRIDE:Q5E915PRO:PR:Q5E915
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q5E915
Proteomes:UP000006548RefSeq:NP_188743.3scanprosite:PS00678SMART:SM00320
SMR:Q5E915STRING:3702.AT3G21060.1SUPFAM:SSF50978TAIR:AT3G21060
UniGene:At.5579UniGene:At.72877UniProt:Q5E915
Coordinates (TAIR10) chr3:+:7377822..7379942
Molecular Weight (calculated) 60144.90 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.35
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAPIIDPLQ GDFPEVIEEY LEHGVIKCVA FNHRGSLLAA GCADGGCVIW DFETRGIAKE IRDNDCSAAI TSVSWSKYGH RLLVSAADKS LTLWDVSTGE
101: KIARTILQQT PLQARLNPGL SSPSLCLACP LSSAPMIVDF DIDCTTLLPV SVPEMPDVLA PPQRSKCPES NPPFSPAAAC FNKCGDLVYI GNSKGEILIV
201: DYKSVRVLAL VSASGAAPVK NIVFSRNGQY LLTNSHDRTI RIYENLLPAK NVLKSLEDLG KNIDGLDGIE KMKTVGSKCL TLFREFQDSV TKMHWKAPCF
301: SGDGEWVVGG SACKGEHKIY IWDRAGHLVK ILEGPKEALI DLAWHPVHPI IVSVSLAGLV YIWAKDYTEN WSAFAPDFKE LEENEEYVER EDEFDLIPET
401: EKVKVLDVNE DEEVDIDTVE KDAFSDSDMS VEELRYLPAE PIPDTNDQQD NLVESIKLIE GQISASPASE EAGQNGHHAS SPQAEEMGET RGKRKRKPSE
501: KAMELQAEKA KPLKGSGKTV RAKNRAAFDQ ETDDSINGGD DDDDAYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)