suba logo
AT5G55540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tornado 1
Curator
Summary (TAIR10)
Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.
Computational
Description (TAIR10)
TORNADO 1 (TRN1); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G10510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INMFeggNOG:ENOG4111F3HEMBL:AB015479EMBL:CP002688
EnsemblPlants:AT5G55540EnsemblPlants:AT5G55540.1entrez:835648Gene3D:3.80.10.10
GeneID:835648Genevisible:Q9FJ57GO:GO:0005525GO:GO:0009734
GO:GO:0009825GO:GO:0009926GO:GO:0009933GO:GO:0009956
GO:GO:0009965GO:GO:0010305GO:GO:0010540GO:GO:0016021
GO:GO:0016787Gramene:AT5G55540.1hmmpanther:PTHR24106hmmpanther:PTHR24106:SF153
HOGENOM:HOG000083370InParanoid:Q9FJ57InterPro:IPR027417InterPro:IPR032171
InterPro:IPR032675KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:ath:AT5G55540
ncoils:CoilOMA:HICTDQDPaxDb:Q9FJ57Pfam:PF16095
Pfam:Q9FJ57PhylomeDB:Q9FJ57PRIDE:Q9FJ57PRO:PR:Q9FJ57
ProteinModelPortal:Q9FJ57Proteomes:UP000006548RefSeq:NP_200365.1SMR:Q9FJ57
STRING:3702.AT5G55540.1SUPFAM:SSF52047SUPFAM:SSF52540TAIR:AT5G55540
tair10-symbols:LOP1tair10-symbols:TRN1UniGene:At.29435UniProt:Q9FJ57
Coordinates (TAIR10) chr5:-:22496322..22500543
Molecular Weight (calculated) 156956.00 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.25
Length 1380 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESEPDQSFK DLSWFLQAIK DPQQTFFNLQ TLSFSSSGNT THCQLITESS MNINVTRDNL TSLSQIFIEL ATSLETQTSL RNLEFEGIFW EIELLQSLGL
0101: LLDNTSKIKQ LAFRKNRFSE QCLNELSEIL KRNRFLKEVM FLESSIGYRG ATLLGSALQV NDSLEELQIW EDSIGSKGAE ELSRMIEMNS SLKLFSIFDS
0201: SPFTATPLIS AVLGMNREME VHMWSGDHKR DRSLKLVEFL PESKTLRIYQ IDISGSCRVA AALGMNTTVR SLDMTGAKLN SRWAKEFRWV LEQNKTLREV
0301: KLSKTGLKDK AVVYIAAGLF KNKSLQSLYV DGNRFGSVGV EDLLCPLSRF SALQLQANIT LRSIVFGGSN TKIGRDGLTA VLKMVTTNET VVHLGIHDDA
0401: SLGPDDFIHI FKSLQKNASL RRFSLQGCKG VRGDRVLEAI TETLQINPLI EEIDLARTPL QDSGKADEIY QKLGHNGRKI DEAETDDSLK DMPLTEPKSV
0501: RAFLCGQNYA GKTTLCNSIL QSSSASGFPY VENVRNLMNP VEQVVKTVGG MKIKTFKDEE TKISMWNLAG QHEFFALHDL MFPSPCFFLI VLSLFRKPSN
0601: KEPKTPAEVE EELEYWLRFI VSNSRKAIQQ CMKPNVTIVL THSEKINLQS ESFQATVGCI QRLRDKFQAL VEFYPTVFTV DARSSPSVSK LTHHIRMTSK
0701: AILQRVPRVY QLCNDIVQLL SDWRSENSNK PIMRWKAFAD LCQFKVPSLR IKSRNENIQI VETRRHAIAT CLHQMGEVIY FDDLGFLILD YEWFCGEVLT
0801: QLIKLDVRKQ STGERNGFVS RKELEKTLRS SLQSPIPGMT SKVLEHFDAC DLVKMMKKVE LCYEQDPSSP DSSLLVPSIL EEGRGKTQKW QINTHDCVYS
0901: GRHLQCDDSS HMFLTAGFFP RLQVHLHNRI MELKNQHGAT YSLEKYLIAI TIHGINIRVE LGGQLGNYID VLACSSKSLT ETLRLIHQLI IPAIQSSCRG
1001: VILLEHIIRP QCVQDLTPPR FRQSQFVSLH RLKEALSSVP AETMYDYQHT WDSVLDSGKT VLRAGFDLAR NLLSDDDFRE VLQRRYHDLH NLAQELQVPT
1101: DENPEADNHV PVTNELEKVD PSFGGIAKGV EAVLQRLKII EQEIRDLKQE IQGLRYYEHR LLIQLHHKVN YLVNYNVQMD ERKVPNMFYF IRAENYGRRL
1201: ITSMVPGMVA LRIHMLCEFR REMHVVEDQL GCDVMQIDNQ AVKCLAPYMT NFMKLVTFAL RIGANWAAGM GHMIPDLSHT IAHLANPAVM TGAAGAAGAI
1301: GVAAALGRNR GRDRDIQEQE QRAAQQWLID YLREQTCSTG RDIAEKFGLW RVRYRDDGSI AWICKRHMIT RAHEVIQVPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)