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AT1G47260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24727099 (2014): mitochondrion
  • PMID:23761796 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:17406791 (2007): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:15276431 (2004): mitochondrion
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : gamma carbonic anhydrase 2
Curator
Summary (TAIR10)
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational
Description (TAIR10)
gamma carbonic anhydrase 2 (GAMMA CA2); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, regulation of oxygen and reactive oxygen species metabolic process, anther dehiscence, photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 1 (TAIR:AT1G19580.1); Has 12062 Blast hits to 12006 proteins in 2273 species: Archae - 302; Bacteria - 8576; Metazoa - 53; Fungi - 108; Plants - 233; Viruses - 0; Other Eukaryotes - 2790 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G47260-MONOMERBioCyc:MetaCyc:AT1G47260-MONOMERBioGrid:26354EC:4.2.1.-eggNOG:COG0663eggNOG:ENOG410II35EMBL:AC079677
EMBL:AF249876EMBL:AY045979EMBL:AY113936EMBL:CP002684EnsemblPlants:AT1G47260EnsemblPlants:AT1G47260.1entrez:841129
GeneID:841129Genevisible:Q9C6B3GO:GO:0004089GO:GO:0005739GO:GO:0005747GO:GO:0009507GO:GO:0009651
GO:GO:0009853GO:GO:0009901GO:GO:0016020GO:GO:0031966GO:GO:0042802GO:GO:0045271GO:GO:0046872
GO:GO:0070207GO:GO:2000377Gramene:AT1G47260.1gramene_pathway:4.2.1.1gramene_pathway:CYANCAT-PWYhmmpanther:PTHR13061hmmpanther:PTHR13061:SF10
HOGENOM:HOG000049430InParanoid:Q9C6B3IntAct:Q9C6B3InterPro:IPR001451InterPro:IPR011004KEGG:ath:AT1G47260MINT:MINT-7266055
OMA:RNSSIWYPaxDb:Q9C6B3Pfam:PF00132Pfam:Q9C6B3PhylomeDB:Q9C6B3PIR:D96513PRIDE:Q9C6B3
PRO:PR:Q9C6B3ProteinModelPortal:Q9C6B3Proteomes:UP000006548RefSeq:NP_175159.1SMR:Q9C6B3STRING:3702.AT1G47260.1SUPFAM:SSF51161
TAIR:AT1G47260tair10-symbols:APFItair10-symbols:GAMMA CA2UniGene:At.397UniProt:Q9C6B3
Coordinates (TAIR10) chr1:-:17321384..17323347
Molecular Weight (calculated) 30067.00 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.16
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTLGRAIYT VGNWIRGTGQ ALDRVGSLLQ GSHRIEEHLS RHRTLMNVFD KSPLVDKDVF VAPSASVIGD VQIGKGSSIW YGCVLRGDVN NISVGSGTNI
101: QDNTLVHVAK TNISGKVLPT LIGDNVTVGH SAVIHGCTVE DDAFVGMGAT LLDGVVVEKH AMVAAGSLVK QNTRIPSGEV WGGNPAKFMR KLTDEEIVYI
201: SQSAKNYINL AQIHASENSK SFEQIEVERA LRKKYARKDE DYDSMLGITR ETPPELILPD NVLPGGKPVA KVPSTQYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)