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ATMG00665.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NADH dehydrogenase 5B
Curator
Summary (TAIR10)
Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from three different pre-cursors, NAD5a, NAD5b and NAD5c.
Computational
Description (TAIR10)
NADH dehydrogenase 5B (NAD5B); CONTAINS InterPro DOMAIN/s: NADH-plastoquinone oxidoreductase, chain 5 (InterPro:IPR003945), NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal (InterPro:IPR001516), NADH:ubiquinone/plastoquinone oxidoreductase (InterPro:IPR001750); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase 5A (TAIR:ATMG00513.1).
Protein Annotations
EC:1.6.5.3eggNOG:COG1009eggNOG:KOG4668EMBL:EU999005
EnsemblPlants:ATMG00665EnsemblPlants:ATMG00665.1entrez:3371313ExpressionAtlas:B5TM94
GO:GO:0005743GO:GO:0008137GO:GO:0016021GO:GO:0042773
GO:GO:0070469hmmpanther:PTHR22773hmmpanther:PTHR22773:SF50InterPro:IPR001516
InterPro:IPR001750InterPro:IPR003945InterPro:IPR010934PaxDb:B5TM94
Pfam:P29388Pfam:PF00361Pfam:PF00662Pfam:PF06455
STRING:3702.ATMG00665.1tair10-symbols:NAD5tair10-symbols:NAD5.2tair10-symbols:NAD5B
TIGRfam:TIGR01974TIGRFAMs:TIGR01974TMHMM:TMhelixUniProt:A7KNH7
UniProt:B5TM94UniProt:G1C2Q2UniProt:G1C2T3UniProt:G1C2W3
UniProt:P29388
Coordinates (TAIR10) chrM:-:190740..190761
Molecular Weight (calculated) 73912.20 Da
IEP (calculated) 7.70
GRAVY (calculated) 0.58
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLLIVFLPL LGSSVAGFFG RFLGSEGSAI MTTTCVSFSS ILSLIAFYEV APGASACYLR IAPWISSEMF DASWGFLFDS PTVVMLIVVT SISSLVHLYS
101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR
201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT
301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS
401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AKDMMIGLGT NFWANSPLVL
501: PKNEILAESE FAAPTITKLI PILFSTSGAF VAYNVNPVAD QFQRAFQTST FCNRLYSFFN KRWFFDQVLN DFLVRSFLRF GYEVSFEALD KGAIEILGPY
601: GISYTFRRLA ERISQLQSGF VYHYAFAMLL GSTLFVTFSR MWDSLSSWVD NRSSFILIVS SFYTKSSQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)