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AT2G27730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: plastidBaCelLo: mitochondrion
EpiLoc: mitochondrionMitoPred: mitochondrion
Mitoprot 2: mitochondrionMultiLoc: cytosol
Plant-mPloc: mitochondrionPredotar: mitochondrion
PredSL: mitochondrionPProwler: mitochondrion
SLPFA: mitochondrionSLP-Local: mitochondrion
SubLoc: mitochondrionTargetP: mitochondrion
WoLF PSORT: plastidYLoc: mitochondrion
 AmiGO : mitochondrion 12837548
AmiGO : mitochondrion 14671022
AmiGO : mitochondrion 15276431
AmiGO : mitochondrion 16407270
AmiGO : mitochondrion 18385124
AmiGO : mitochondrion 20197505
AmiGO : nucleus 15496452
AmiGO : vacuole 15539469
SwissProt : mitochondrion 16381842
TAIR : mitochondrion 16407270
TAIR : mitochondrion 18385124
TAIR : vacuole 15539469
TAIR : mitochondrion 12837548
TAIR : nucleus 15496452
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid
  • PMID:24727099 (2014): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:23761796 (2013): mitochondrion
  • PMID:23750852 (2013): mitochondrion
  • PMID:23549413 (2013): plastid
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): mitochondrion
  • PMID:21311031 (2011): plastid
  • PMID:20197505 (2010): mitochondrion
  • PMID:18385124 (2008): mitochondrion
  • PMID:18189341 (2008): mitochondrion
  • PMID:17406791 (2007): mitochondrion
  • PMID:15496452 (2005): nucleus
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
  • PMID:11870776 (2002): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : copper ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 copper ion binding; FUNCTIONS IN: copper ion binding; INVOLVED IN: photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 74 Blast hits to 74 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G27730-MONOMERBioCyc:MetaCyc:AT2G27730-MONOMEReggNOG:ENOG410J0TEeggNOG:ENOG410Y847
EMBL:AC005824EMBL:AY035140EMBL:AY059074EMBL:AY087283
EMBL:CP002685EnsemblPlants:AT2G27730EnsemblPlants:AT2G27730.1entrez:817319
GeneID:817319Genevisible:Q9ZUX4GO:GO:0005507GO:GO:0005730
GO:GO:0005739GO:GO:0005747GO:GO:0005773GO:GO:0009853
GO:GO:0031966GO:GO:0045271Gramene:AT2G27730.1hmmpanther:PTHR33878
hmmpanther:PTHR33878:SF1HOGENOM:HOG000242969InParanoid:Q9ZUX4IntAct:Q9ZUX4
KEGG:ath:AT2G27730MINT:MINT-4330304OMA:TRMAVRYPaxDb:Q9ZUX4
Pfam:Q9ZUX4PhylomeDB:Q9ZUX4PIR:C84676PRIDE:Q9ZUX4
PRO:PR:Q9ZUX4Proteomes:UP000006548RefSeq:NP_565657.1STRING:3702.AT2G27730.1
TAIR:AT2G27730TMHMM:TMhelixUniGene:At.23025UniProt:Q9ZUX4
Coordinates (TAIR10) chr2:-:11820056..11820867
Molecular Weight (calculated) 11948.20 Da
IEP (calculated) 10.32
GRAVY (calculated) -0.47
Length 113 amino acids
Sequence (TAIR10)
(BLAST) 		001: MATRNALRIV SRRFSSGKVL SEEERAAENV FIKKMEQEKL QKLARQGPGE QAAGSASEAK VAGATASASA ESGPKVSEDK NRNYAVVAGV VAIVGSIGWY
101: LKAGGKKQPE VQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)