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AT1G19580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23761796 (2013): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:18189341 (2008): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma carbonic anhydrase 1
Curator
Summary (TAIR10)
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational
Description (TAIR10)
gamma carbonic anhydrase 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265; Bacteria - 7962; Metazoa - 13; Fungi - 83; Plants - 197; Viruses - 0; Other Eukaryotes - 2374 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G19580-MONOMERBioCyc:ARA:GQT-2082-MONOMEREC:4.2.1.-eggNOG:COG0663
eggNOG:ENOG410II35EMBL:AC024609EMBL:AC025808EMBL:AK175388
EMBL:AK176844EMBL:AK176887EMBL:AK229264EMBL:AY085025
EMBL:CP002684EnsemblPlants:AT1G19580EnsemblPlants:AT1G19580.1entrez:838545
ExpressionAtlas:Q9FWR5GeneID:838545Genevisible:Q9FWR5GO:GO:0004089
GO:GO:0005739GO:GO:0005747GO:GO:0009853GO:GO:0031966
GO:GO:0045271GO:GO:0046872GO:GO:0070207gramene_pathway:4.2.1.1
gramene_pathway:CYANCAT-PWYhmmpanther:PTHR13061hmmpanther:PTHR13061:SF9HOGENOM:HOG000049430
InParanoid:Q9FWR5IntAct:Q9FWR5InterPro:IPR001451InterPro:IPR011004
OMA:YAGELWAPaxDb:Q9FWR5Pfam:PF00132Pfam:Q9FWR5
PhylomeDB:Q9FWR5PIR:E86328PRIDE:Q9FWR5PRO:PR:Q9FWR5
ProteinModelPortal:Q9FWR5Proteomes:UP000006548RefSeq:NP_564091.1SMR:Q9FWR5
STRING:3702.AT1G19580.1SUPFAM:SSF51161TAIR:AT1G19580tair10-symbols:GAMMA CA1
UniGene:At.28167UniGene:At.67224UniProt:Q9FWR5
Coordinates (TAIR10) chr1:+:6774937..6777092
Molecular Weight (calculated) 29972.80 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.22
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTLGRAFYS VGFWIRETGQ ALDRLGCRLQ GKNYFREQLS RHRTLMNVFD KAPIVDKEAF VAPSASVIGD VHIGRGSSIW YGCVLRGDVN TVSVGSGTNI
101: QDNSLVHVAK SNLSGKVHPT IIGDNVTIGH SAVLHGCTVE DETFIGMGAT LLDGVVVEKH GMVAAGALVR QNTRIPSGEV WGGNPARFLR KLTDEEIAFI
201: SQSATNYSNL AQAHAAENAK PLNVIEFEKV LRKKHALKDE EYDSMLGIVR ETPPELNLPN NILPDKETKR PSNVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)