ATMG00060.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : NADH dehydrogenase subunit 5C | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from the three different pre-cursors, NAD5a, NAD5b and NAD5c. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NADH dehydrogenase subunit 5C (NAD5C); CONTAINS InterPro DOMAIN/s: NADH-plastoquinone oxidoreductase, chain 5 (InterPro:IPR003945), NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal (InterPro:IPR001516), NADH:ubiquinone/plastoquinone oxidoreductase (InterPro:IPR001750); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase 5B (TAIR:ATMG00665.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chrM:-:20571..22086 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73912.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 669 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYLLIVFLPL LGSSVAGFFG RFLGSEGSAI MTTTCVSFSS ILSLIAFYEV APGASACYLR IAPWISSEMF DASWGFLFDS PTVVMLIVVT SISSLVHLYS 101: ISYMSEDPHS PRFMCYLSIL TFFMPMLVTG DNSLQLFLGW EGVGLASYLL IHFWFTRLQA DKAATKAMLV NRVGDFGLAL GISGRFTLFQ TVDFSTIFAR 201: ASAPRNSWIS CNMRLNAISL ICILLLIGAV GKSAQIGSHT WSPDAMEGPT PVSASIHAAT MVTAGVFMIA RCSPLFEYPP TALIVITSAG ATTSFLAATT 301: GILQNDLKRV IAYSTCSQLG YMIFACGISN YSVSVFHLMN HAFFKALLFL SAGSVIHAMS DEQDMRKMGG LASSFPLTYA MMLIGSLSLI GFPFLTGFYS 401: KDVILELAYT KYTISGNFAF WLGSVSVLFT SYYSFRLLFL TFLVPTNSFG RDISRCHDAP IPMAIPLILL ALGSLFVGYL AKDMMIGLGT NFWANSPLVL 501: PKNEILAESE FAAPTITKLI PILFSTSGAF VAYNVNPVAD QFQRAFQTST FCNRLYSFFN KRWFFDQVLN DFLVRSFLRF GYEVSFEALD KGAIEILGPY 601: GISYTFRRLA ERISQLQSGF VYHYAFAMLL GSTLFVTFSR MWDSLSSWVD NRSSFILIVS SFYTKSSQE |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)