suba logo
AT3G54120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.817
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Reticulon family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G19460.1); Has 661 Blast hits to 661 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 0; Plants - 460; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:9896eggNOG:ENOG410XPKHeggNOG:KOG1792EMBL:AK229371
EMBL:AL132957EMBL:BT010698EMBL:BT010978EMBL:CP002686
EnsemblPlants:AT3G54120EnsemblPlants:AT3G54120.1entrez:824579GeneID:824579
Genevisible:Q9M392GO:GO:0005789GO:GO:0016021Gramene:AT3G54120.1
hmmpanther:PTHR10994hmmpanther:PTHR10994:SF65HOGENOM:HOG000237479InParanoid:Q9M392
IntAct:Q9M392InterPro:IPR003388KEGG:ath:AT3G54120OMA:SQVLMIL
PaxDb:Q9M392Pfam:PF02453Pfam:Q9M392Pfscan:PS50845
PhylomeDB:Q9M392PIR:T47571PRIDE:Q9M392PRO:PR:Q9M392
PROSITE:PS50845ProteinModelPortal:Q9M392Proteomes:UP000006548RefSeq:NP_190980.1
STRING:3702.AT3G54120.1TAIR:AT3G54120TMHMM:TMhelixUniGene:At.25009
UniGene:At.68442UniProt:Q9M392
Coordinates (TAIR10) chr3:-:20041269..20042133
Molecular Weight (calculated) 23054.40 Da
IEP (calculated) 6.52
GRAVY (calculated) 0.42
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)