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AT1G19130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
Protein Annotations
DNASU:838496eggNOG:COG3542eggNOG:ENOG410IXN2EMBL:AK117302
EMBL:CP002684EnsemblPlants:AT1G19130EnsemblPlants:AT1G19130.1entrez:838496
Gene3D:2.60.120.10GeneID:838496GO:GO:0005829Gramene:AT1G19130.1
hmmpanther:PTHR33387hmmpanther:PTHR33387:SF3InterPro:IPR009327InterPro:IPR011051
InterPro:IPR014710KEGG:ath:AT1G19130KO:K09705OMA:ETSAWHR
Pfam:PF06172PhylomeDB:Q8GYZ3Proteomes:UP000006548RefSeq:NP_564073.4
SMR:Q8GYZ3SUPFAM:SSF51182TAIR:AT1G19130UniGene:At.15081
UniGene:At.22114UniProt:Q8GYZ3
Coordinates (TAIR10) chr1:-:6609545..6610555
Molecular Weight (calculated) 21641.70 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.22
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSKMVKSSE IVGKLNLRAH QEGGFFAETF RDSSVFLSTS QLPPTFKVDR AVSTSIYFLL PSGSVSRLHR IPMAETWHFY LGEPLTVVEL YDDGKLKFTC
101: LGPDLFEGDQ KPQYTVPPNV WFGSFPTKDV HFSQDGALLK AEARDSENHF SLVGCTCAPA FQFEDFELAK RSDLLSRFPQ HESLITMLSY PE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)