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AT1G29940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear RNA polymerase A2
Curator
Summary (TAIR10)
Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).
Computational
Description (TAIR10)
nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.6eggNOG:COG0085eggNOG:KOG0216EMBL:AC008030
EMBL:AC022455EMBL:AK230187EMBL:AY075644EMBL:CP002684
EnsemblPlants:AT1G29940EnsemblPlants:AT1G29940.1entrez:839872Gene3D:2.40.270.10
GeneID:839872Genevisible:F4I366GO:GO:0003677GO:GO:0003899
GO:GO:0005736GO:GO:0005829GO:GO:0006360GO:GO:0032549
GO:GO:0042254GO:GO:0046872Gramene:AT1G29940.1hmmpanther:PTHR20856
hmmpanther:PTHR20856:SF5InParanoid:F4I366IntAct:F4I366InterPro:IPR007120
InterPro:IPR007121InterPro:IPR007641InterPro:IPR007642InterPro:IPR007644
InterPro:IPR007645InterPro:IPR009674InterPro:IPR015712KEGG:00230+2.7.7.6
KEGG:00240+2.7.7.6KEGG:ath:AT1G29940KO:K03002OMA:NVDSAMM
PANTHER:PTHR20856PaxDb:F4I366Pfam:PF00562Pfam:PF04560
Pfam:PF04561Pfam:PF04563Pfam:PF04565Pfam:PF06883
PIR:B86423PRIDE:F4I366PROSITE:PS01166ProteinModelPortal:F4I366
Proteomes:UP000006548RefSeq:NP_564341.2scanprosite:PS01166SMR:F4I366
STRING:3702.AT1G29940.1SUPFAM:SSF64484TAIR:AT1G29940tair10-symbols:NRPA2
UniGene:At.16301UniProt:F4I366
Coordinates (TAIR10) chr1:-:10479322..10486670
Molecular Weight (calculated) 132389.00 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.33
Length 1178 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVVNAKDSTV PTMEDFKELH NLVTHHIESF DYMTLKGLDV MFNRIKPVSV YDPNTENELS IWLENPLVFA PQKESFKSTS RKEPLLPFEC RQAKISYTGT
0101: FMADVCFKYN DGVVVRDKFD FGQFPIMLMS KLCSLKGADC RKLLKCKEST SEMGGYFILN GIERVFRCVI APKRNHPTSM IRNSFRDRKE GYSSKAVVTR
0201: CVRDDQSSVT VKLYYLRNGS ARVGFWIVGR EYLLPVGLVL KALTNSCDEE IYESLNCCYS EHYGRGDGAI GTQLVRERAK IILDEVRDLG LFTREQCRKH
0301: LGQHFQPVLD GVKKESLSIV AEAVLRDYLF VHLDNDHDKF NLLIFIIQKL YSLVDQTSLP DNPDSLQNQE ILVPGHVITI YLKEKLEEWL RKCKSLLKDE
0401: LDNTNSKFSF ESLADVKKLI NKNPPRSIGT SIETLLKTGA LKTQSGLDLQ QRAGYTVQAE RLNFLRFLSF FRAVHRGASF AGLRTTTVRK LLPESWGFLC
0501: PVHTPDGTPC GLLNHMTRTS RITSQFDSKG NIRDFLKIRK SVVDVLTGAG MVPSLPKLVR AGPPKVIHVL LDGQVVGTLS SNLVTKVVSY IRRLKVEAPS
0601: VIPEDLEVGY VPTSMGGSYP GLYLASCPAR FIRPVKNISI PSDNIELIGP FEQVFMEISC PDGGNGGRNN SSLATHEEIH PTGMISVVAN LTPWSDHNQS
0701: PRNMYQCQMA KQTMAYSTQA LQFRADQKIY HLQTPQSPVV RTKTYTTYSI DENPTGTNAI VAVLAHTGFD MEDAMILNKS SVERGMCHGQ IYQTENIDLS
0801: DQNSRFDSGS KSFRRSTNKA EHFRIDADGL PSVGQKLYPD EPYCSIYDEV TNKTRHMKRK GTDPVIVDFV SVDMKSKKHP QRANIRFRHA RNPIIGDKFS
0901: SRHGQKGVCS QLWPDIDMPF NGVTGMRPDL IINPHAFPSR MTIAMLLESI AAKGGSLHGK FVDATPFRDA VKKTNGEEES KSSLLVDDLG SMLKEKGFNH
1001: YGTETLYSGY LGVELKCEIF MGPVYYQRLR HMVSDKFQVR STGQVDQLTH QPIKGRKRGG GIRFGEMERD SLLAHGASYL LHDRLHTSSD HHIADVCSLC
1101: GSLLTSSVVN VQQKKLIQEI GKLPPGRTPK KVTCYSCKTS KGMETVAMPY VFRYLAAELA SMNIKMTLQL SDREGVTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)