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AT1G20140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.969
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SKP1-like 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 4 (SK4); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 3 (TAIR:AT2G25700.1); Has 1439 Blast hits to 1435 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 560; Fungi - 180; Plants - 528; Viruses - 11; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
BioGrid:23843DIP:DIP-34007NeggNOG:COG5201eggNOG:KOG1724EMBL:AC022472EMBL:AY058205EMBL:AY098980
EMBL:CP002684EnsemblPlants:AT1G20140EnsemblPlants:AT1G20140.1entrez:838604GeneID:838604Genevisible:Q9LNT9GO:GO:0005634
GO:GO:0005730GO:GO:0005737GO:GO:0006511GO:GO:0016567GO:GO:0019005Gramene:AT1G20140.1hmmpanther:PTHR11165
HOGENOM:HOG000172184IntAct:Q9LNT9InterPro:IPR001232InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897
KEGG:ath:AT1G20140KO:K03094OMA:NEGSHIEPaxDb:Q9LNT9Pfam:PF01466Pfam:PF03931Pfam:Q9LNT9
PhylomeDB:Q9LNT9PIR:B86335PIRSF:PIRSF028729PRIDE:Q9LNT9PRO:PR:Q9LNT9ProteinModelPortal:Q9LNT9Proteomes:UP000006548
RefSeq:NP_564105.1SMART:SM00512SMR:Q9LNT9STRING:3702.AT1G20140.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT1G20140
tair10-symbols:ASK4tair10-symbols:SK4UniGene:At.26484UniGene:At.26612UniPathway:UPA00143UniProt:Q9LNT9
Coordinates (TAIR10) chr1:+:6986430..6987079
Molecular Weight (calculated) 18188.40 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.46
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)