suba logo
AT3G62230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G54820.1); Has 483 Blast hits to 473 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 483; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10710eggNOG:ENOG410JA8CeggNOG:ENOG41113WGEMBL:AK118317
EMBL:AK220964EMBL:AL138651EMBL:BT005694EMBL:CP002686
EnsemblPlants:AT3G62230EnsemblPlants:AT3G62230.1entrez:825396Gene3D:3.80.10.10
GeneID:825396Genevisible:Q9M1Q1GO:GO:0005634GO:GO:0016567
GO:GO:0048235Gramene:AT3G62230.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF56
HOGENOM:HOG000112516InParanoid:Q9M1Q1IntAct:Q9M1Q1InterPro:IPR001810
InterPro:IPR032675KEGG:ath:AT3G62230OMA:TFTICPYPaxDb:Q9M1Q1
Pfam:PF00646Pfam:PF08387Pfam:Q9M1Q1PhylomeDB:Q9M1Q1
PIR:T48015PRIDE:Q9M1Q1PRO:PR:Q9M1Q1ProteinModelPortal:Q9M1Q1
Proteomes:UP000006548RefSeq:NP_191782.1SMR:Q9M1Q1STRING:3702.AT3G62230.1
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G62230UniGene:At.34157
UniPathway:UPA00143UniProt:Q9M1Q1
Coordinates (TAIR10) chr3:+:23031589..23032974
Molecular Weight (calculated) 53145.40 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.02
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGSAVDII STLSDFLLVL IISNLSFKEA LSTSRLSTRW RHICRETRNI SFREDEIVTF ADDSVARYYQ RAALVAYMVG WVNNFTGGVV ESFELRLSNS
101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL
201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT
301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF
401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)