AT3G62230.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G54820.1); Has 483 Blast hits to 473 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 483; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:23031589..23032974 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 53145.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.62 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 461 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDSGSAVDII STLSDFLLVL IISNLSFKEA LSTSRLSTRW RHICRETRNI SFREDEIVTF ADDSVARYYQ RAALVAYMVG WVNNFTGGVV ESFELRLSNS 101: YAFEEGVTTL IEFAVSKNVK HLFLDLSEPR WVTNNDAAQL EPGLIKLPES FYKITSLVTL KLFGCRFEPS RLAKPGMVKT MFFRWIRLEM LSALIAKTPL 201: LEILNIKNCW EIGLDAITGY NDRLMKLVFK YCSFSAQQTT LDVPNIQIFK YFGKVYRFEF ASANKLMEEA YLDYREESRY NVSAGAIISG FLYSMLSAKT 301: FTICPYVLQL IQECEDPVRL KAPMETRQLV LKTNFEPNEF VGIRFMLNSS PYLETLSFQM VGPRPIEEMV PQIDPEAYWG QNTSHECLKK TLKKVEVWSF 401: YGGTHELRVL EYLIRYGRML ERVDLYQPIG LDDIQLLPIR AAADRVGEFE ARSENLVVTF Y |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)