AT3G62710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20950.2); Has 10899 Blast hits to 10226 proteins in 1653 species: Archae - 71; Bacteria - 6941; Metazoa - 14; Fungi - 1479; Plants - 475; Viruses - 0; Other Eukaryotes - 1919 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23197739..23200559 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70846.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 650 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAAMFGVRS FFFSAVIVIL FAGRYGEATA ADRGYIKYKD PKVAVEERVE DLLIRMTLPE KLGQMCQIDR FNFSQVTGGV ATVVPEIFTK YMIGSVLSNP 101: YDTGKDIAKR IFQTNAMKKL SLSTRLGIPL LYAVDAVHGH NTFIDATIFP HNVGLGATRD PQLVKKIGAI TAQEVRATGV AQAFAPCVAV CRDPRWGRCY 201: ESYSEDPAVV NMMTESIIDG LQGNAPYLAD PKINVAGCAK HFVGDGGTIN GINENNTVAD NATLFGIHMP PFEIAVKKGI ASIMASYSSL NGVKMHANRA 301: MITDYLKNTL KFQGFVISDW LGIDKITPIE KSNYTYSIEA SINAGIDMVM VPWAYPEYLE KLTNLVNGGY IPMSRIDDAV RRILRVKFSI GLFENSLADE 401: KLPTTEFGSE AHREVGREAV RKSMVLLKNG KTDADKIVPL PKKVKKIVVA GRHANDMGWQ CGGFSLTWQG FNGTGEDMPT NTKHGLPTGK IKGTTILEAI 501: QKAVDPTTEV VYVEEPNQDT AKLHADAAYT IVVVGETPYA ETFGDSPTLG ITKPGPDTLS HTCGSGMKCL VILVTGRPLV IEPYIDMLDA LAVAWLPGTE 601: GQGVADVLFG DHPFTGTLPR TWMKHVTQLP MNVGDKNYDP LYPFGYGIKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)