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AT3G01270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectate lyase, N-terminal (InterPro:IPR007524), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT5G15110.1); Has 1587 Blast hits to 1580 proteins in 266 species: Archae - 0; Bacteria - 700; Metazoa - 0; Fungi - 174; Plants - 701; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G01270-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866
eggNOG:ENOG410II3GEMBL:AC008261EMBL:AC010676EMBL:AY084341
EMBL:CP002686EnsemblPlants:AT3G01270EnsemblPlants:AT3G01270.1entrez:821142
ExpressionAtlas:Q9SRH4Gene3D:2.160.20.10GeneID:821142Genevisible:Q9SRH4
GO:GO:0030570GO:GO:0045490GO:GO:0046872Gramene:AT3G01270.1
hmmpanther:PTHR31683hmmpanther:PTHR31683:SF7HOGENOM:HOG000237948InParanoid:Q9SRH4
InterPro:IPR002022InterPro:IPR007524InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT3G01270KO:K01728
OMA:WRTRATQPaxDb:Q9SRH4Pfam:PF00544Pfam:PF04431
Pfam:Q9SRH4PhylomeDB:Q9SRH4PRIDE:Q9SRH4PRINTS:PR00807
PRO:PR:Q9SRH4ProteinModelPortal:Q9SRH4Proteomes:UP000006548RefSeq:NP_186776.1
SMART:SM00656SMR:Q9SRH4STRING:3702.AT3G01270.1SUPFAM:SSF51126
TAIR:AT3G01270UniGene:At.18310UniPathway:UPA00545UniProt:Q08A70
UniProt:Q9SRH4
Coordinates (TAIR10) chr3:-:82892..84720
Molecular Weight (calculated) 53858.20 Da
IEP (calculated) 9.36
GRAVY (calculated) -0.57
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)