AT3G05610.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G27870.1); Has 12764 Blast hits to 3759 proteins in 499 species: Archae - 10; Bacteria - 1644; Metazoa - 570; Fungi - 815; Plants - 2126; Viruses - 67; Other Eukaryotes - 7532 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:1625876..1627976 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 72921.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 669 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSYGYDDESK RKRRYIVITI SSVLLISMVV AVTVGVSLNK HDGDSKGKAE VNASVKAVKD VCAPTDYRKT CEDTLIKNGK NTTDPMELVK TAFNVTMKQI 101: TDAAKKSQTI MELQKDSRTR MALDQCKELM DYALDELSNS FEELGKFEFH LLDEALINLR IWLSAAISHE ETCLEGFQGT QGNAGETMKK ALKTAIELTH 201: NGLAIISEMS NFVGQMQIPG LNSRRLLAEG FPSWVDQRGR KLLQAAAAYS DVKPDIVVAQ DGSGQYKTIN EALQFVPKKR NTTFVVHIKA GLYKEYVQVN 301: KTMSHLVFIG DGPDKTIISG NKNYKDGITT YRTATVAIVG NYFIAKNIGF ENTAGAIKHQ AVAVRVQSDE SIFFNCRFDG YQDTLYTHSH RQFFRDCTIS 401: GTIDFLFGDA AAVFQNCTLL VRKPLPNQAC PITAHGRKDP RESTGFVFQG CTIAGEPDYL AVKETSKAYL GRPWKEYSRT IIMNTFIPDF VQPQGWQPWL 501: GDFGLKTLFY SEVQNTGPGS ALANRVTWAG IKTLSEEDIL KFTPAQYIQG DDWIPGKGVP YTTGLLAGNP AAATTTPSVS AAAPGFSTFT DTSGADSIAP 601: TASPAASPES SISMAYTGTA SPESSIKVSS STETASPESS FTEASTASPE SSIMVASTES SGSFFSMFT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)