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AT3G05610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G27870.1); Has 12764 Blast hits to 3759 proteins in 499 species: Archae - 10; Bacteria - 1644; Metazoa - 570; Fungi - 815; Plants - 2126; Viruses - 67; Other Eukaryotes - 7532 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G05610-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IGWD
EMBL:AC011620EMBL:AK118374EMBL:BT005948EMBL:CP002686
EnsemblPlants:AT3G05610EnsemblPlants:AT3G05610.1entrez:819727Gene3D:1.20.140.40
Gene3D:2.160.20.10GeneID:819727Genevisible:Q8GX86GO:GO:0004857
GO:GO:0005618GO:GO:0016021GO:GO:0030599GO:GO:0042545
GO:GO:0045330GO:GO:0045490Gramene:AT3G05610.1gramene_pathway:3.1.1.11
gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF13HOGENOM:HOG000217409
InParanoid:Q8GX86InterPro:IPR000070InterPro:IPR006501InterPro:IPR011050
InterPro:IPR012334KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT3G05610
KO:K01051OMA:QQTCEAEPaxDb:Q8GX86Pfam:PF01095
Pfam:PF04043Pfam:Q8GX86PhylomeDB:Q8GX86PRIDE:Q8GX86
PRO:PR:Q8GX86ProteinModelPortal:Q8GX86Proteomes:UP000006548RefSeq:NP_187212.1
SMART:SM00856SMR:Q8GX86STRING:3702.AT3G05610.1SUPFAM:SSF101148
SUPFAM:SSF51126TAIR:AT3G05610TIGRfam:TIGR01614TIGRFAMs:TIGR01614
TMHMM:TMhelixUniGene:At.40644UniPathway:UPA00545UniProt:Q8GX86
Coordinates (TAIR10) chr3:-:1625876..1627976
Molecular Weight (calculated) 72921.30 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.24
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYGYDDESK RKRRYIVITI SSVLLISMVV AVTVGVSLNK HDGDSKGKAE VNASVKAVKD VCAPTDYRKT CEDTLIKNGK NTTDPMELVK TAFNVTMKQI
101: TDAAKKSQTI MELQKDSRTR MALDQCKELM DYALDELSNS FEELGKFEFH LLDEALINLR IWLSAAISHE ETCLEGFQGT QGNAGETMKK ALKTAIELTH
201: NGLAIISEMS NFVGQMQIPG LNSRRLLAEG FPSWVDQRGR KLLQAAAAYS DVKPDIVVAQ DGSGQYKTIN EALQFVPKKR NTTFVVHIKA GLYKEYVQVN
301: KTMSHLVFIG DGPDKTIISG NKNYKDGITT YRTATVAIVG NYFIAKNIGF ENTAGAIKHQ AVAVRVQSDE SIFFNCRFDG YQDTLYTHSH RQFFRDCTIS
401: GTIDFLFGDA AAVFQNCTLL VRKPLPNQAC PITAHGRKDP RESTGFVFQG CTIAGEPDYL AVKETSKAYL GRPWKEYSRT IIMNTFIPDF VQPQGWQPWL
501: GDFGLKTLFY SEVQNTGPGS ALANRVTWAG IKTLSEEDIL KFTPAQYIQG DDWIPGKGVP YTTGLLAGNP AAATTTPSVS AAAPGFSTFT DTSGADSIAP
601: TASPAASPES SISMAYTGTA SPESSIKVSS STETASPESS FTEASTASPE SSIMVASTES SGSFFSMFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)