AT1G55560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 14 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 14 (sks14); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 13 (TAIR:AT3G13400.1); Has 5179 Blast hits to 5121 proteins in 953 species: Archae - 12; Bacteria - 1596; Metazoa - 272; Fungi - 1874; Plants - 1269; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20754474..20756527 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61665.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 549 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGRLLTVLV CLVSTVAIVN AGDPYFFHTW NVTYGTASPL GVPQKVILIN GQFPGPNLNS TSNNNVVINV FNHLDEPFLL TWSGIQHRKN CWQDGVAGTS 101: CPIPAGQNFT YHFQPKDQIG SYFYYPTTSL HRFAGGFGGL RVNSRLLIPV PYADPEDDYT VLLGDWYTAG HTALKNFLDS GRTLGLPNGV LINGKSGKVG 201: GKNEPLFTMK PGKTYKYRLC NVGFKSTLNF RIQNHKMKLV EMEGSHVIQN DYDSLDVHVG QCFSVLVTAN QAAKDYYMVA STRFLKKELS TVGVIRYEGS 301: NVQASTELPK APVGWAWSLN QFRSFRWNLT SNAARPNPQG SYHYGKINIT RSIKLVNSKS VVDGKVRFGF NGVSHVDTET PLKLAEYFQM SEKVFKYNVI 401: KDEPAAKITA LTVQPNVLNI TFRTFVEIIF ENHEKTMQSF HLDGYSFFAV ASEPGRWTPE KRENYNLLDA VSRHTVQVYP KSWSAILLTF DNAGMWNIRS 501: ENLERKYLGE QLYVSVLSPE KSLRDEYNIP LNTNLCGIVK GLPLPAHYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)