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AT3G14040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:16729891 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07850.1); Has 4149 Blast hits to 4131 proteins in 554 species: Archae - 6; Bacteria - 1102; Metazoa - 14; Fungi - 1429; Plants - 1473; Viruses - 4; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14040-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410J8XD
EMBL:AB019229EMBL:CP002686EnsemblPlants:AT3G14040EnsemblPlants:AT3G14040.1
entrez:820618Gene3D:2.160.20.10GeneID:820618GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0071555Gramene:AT3G14040.1
hmmpanther:PTHR31375hmmpanther:PTHR31375:SF23InterPro:IPR000743InterPro:IPR006626
InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT3G14040OMA:NCALINT
Pfam:PF00295PhylomeDB:Q9LVJ4PROSITE:PS00502Proteomes:UP000006548
RefSeq:NP_188020.1scanprosite:PS00502SMART:SM00710SMR:Q9LVJ4
STRING:3702.AT3G14040.1SUPFAM:SSF51126TAIR:AT3G14040TMHMM:TMhelix
UniGene:At.22234UniGene:At.48657UniProt:Q9LVJ4
Coordinates (TAIR10) chr3:-:4648607..4650226
Molecular Weight (calculated) 45699.90 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.01
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSHKASGV LLVLLVVMAT TIANGTPVVD TAKNAATAVE DTAKNAATAV GGAAASVGAK VTGAKPGGAS LDVKASGAKG DGKTDDSAAF AAAWKEACAA
101: GSTITVPKGE YLVESLEFKG PCKGPVTLEL NGNFKAPATV KTTKPHAGWI DFENLADFTL NGNKAIFDGQ GSLAWKANDC AKTGKCNSLP INIRFTGLTN
201: SKINSITSTN SKLFHMNILN CKNITLTDIG IDAPPESLNT DGIHIGRSNG VNLIGAKIKT GDDCVSIGDG TENLIVENVE CGPGHGISIG SLGRYPNEQP
301: VKGVTVRKCL IKNTDNGVRI KTWPGSPPGI ASNILFEDIT MDNVSLPVLI DQEYCPYGHC KAGVPSKVKL SDVTIKNIKG TSATKVAVKL MCSKGVPCTN
401: IALSDINLVH NGKEGPAVSA CSNIKPILSG KLVPAACTEV AKPGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)