AT5G41800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G08230.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16733842..16735888 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49859.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTDPPRPDPF PVTRLDSDAG ALFVLQSKGE WWHAGFHLTT AIVGPTILTL PYAFRGLGWW LGFVCLTTMG LVTFYAYYLM SKVLDHCEKS GRRHIRFREL 101: AADVLGSGLM FYVVIFIQTA INTGIGIGAI LLAGQCLDIM YSSLFPQGTL KLYEFIAMVT VVMMVLSQLP SFHSLRHINC ASLLLSLGYT FLVVGACINL 201: GLSKNAPKRE YSLEHSDSGK VFSAFTSISI IAAIFGNGIL PEIQATLAPP ATGKMLKGLL LCYSVIFFTF YSAAISGYWV FGNNSSSNIL KNLMPDEGPT 301: LAPIVVIGLA VIFVLLQLFA IGLVYSQVAY EIMEKKSADT TKGIFSKRNL VPRLILRTLY MAFCGFMAAM LPFFGDINAV VGAFGFIPLD FVLPMLLYNM 401: TYKPTRRSFT YWINMTIMVV FTCAGLMGAF SSIRKLVLDA NKFKLFSSEV VD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)