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AT4G36790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.764
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G18590.1); Has 13584 Blast hits to 13542 proteins in 1941 species: Archae - 325; Bacteria - 10929; Metazoa - 520; Fungi - 516; Plants - 316; Viruses - 4; Other Eukaryotes - 974 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG1330EMBL:AL161590EMBL:AY063899
EMBL:AY122924EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36790
EnsemblPlants:AT4G36790.1entrez:829832GeneID:829832GO:GO:0016021
GO:GO:0055085Gramene:AT4G36790.1hmmpanther:PTHR23505hmmpanther:PTHR23505:SF7
HOGENOM:HOG000240506InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT4G36790
OMA:LYATDPRPfam:PF07690Pfscan:PS50850PhylomeDB:O23203
PIR:D85434PROSITE:PS50850Proteomes:UP000006548RefSeq:NP_195397.1
STRING:3702.AT4G36790.1SUPFAM:SSF103473TAIR:AT4G36790TMHMM:TMhelix
UniGene:At.27151UniProt:O23203
Coordinates (TAIR10) chr4:+:17336360..17338304
Molecular Weight (calculated) 52810.10 Da
IEP (calculated) 9.17
GRAVY (calculated) 0.56
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHARTRTGI ISVAFKFFRS LFPRHHRTNS MKIKTGTFLG VSISLILINL AAIMERADEN LLPSVYKEVS EAFNAGPSDL GYLTFVRNFV QGLASPLAGV
101: LVITYDRPIV LAIGTFCWAL STAAVGASSY FIQVALWRAV NGFGLAIVIP ALQSFIADSY KDGARGAGFG MLNLIGTIGG IGGGVVATVM AGSEFWGIPG
201: WRCAFIMMAA LSAVIGLLVF LFVVDPRKNI EREELMAHKM NSNSVWNDSL AAAKSVVKVS TFQIIVAQGI IGSFPWTAMV FFTMWFELIG FDHNQTAALL
301: GVFATGGAIG TLMGGIIADK MSRIYPNSGR VMCAQFSAFM GIPFSIILLK VIPQSTSSYS IFSITLFLMG LTITWCGSAV NAPMFAEVVP PRHRTMIYAF
401: DRAFEGSFSS FAAPLVGILS EKLFGYDSRG IDPLKGSSVR EADALSKGLL SMMAVPFGLC CLCYTPLHFV FQKDRENAKI ASSKETEMI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)