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AT2G02180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tobamovirus multiplication protein 3
Curator
Summary (TAIR10)
Necessary for the efficient multiplication of tobamoviruses.
Computational
Description (TAIR10)
tobamovirus multiplication protein 3 (TOM3); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1084) (TAIR:AT1G14530.2); Has 262 Blast hits to 261 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEVMeggNOG:ENOG41110A4EMBL:AB036427EMBL:AC005936
EMBL:AK117222EMBL:AY085048EMBL:CP002685EnsemblPlants:AT2G02180
EnsemblPlants:AT2G02180.1entrez:814749GeneID:814749Genevisible:Q9ZUM2
GO:GO:0009705GO:GO:0016021GO:GO:0046786Gramene:AT2G02180.1
hmmpanther:PTHR31142hmmpanther:PTHR31142:SF3HOGENOM:HOG000239356InParanoid:Q9ZUM2
InterPro:IPR009457KEGG:ath:AT2G02180OMA:YWINAVIPaxDb:Q9ZUM2
Pfam:PF06454Pfam:Q9ZUM2PhylomeDB:Q9ZUM2PIR:H84433
PRIDE:Q9ZUM2PRO:PR:Q9ZUM2ProteinModelPortal:Q9ZUM2Proteomes:UP000006548
RefSeq:NP_027422.1STRING:3702.AT2G02180.1TAIR:AT2G02180tair10-symbols:TOM3
TMHMM:TMhelixUniGene:At.23323UniProt:Q9ZUM2
Coordinates (TAIR10) chr2:+:560976..562961
Molecular Weight (calculated) 34990.70 Da
IEP (calculated) 9.75
GRAVY (calculated) 0.61
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIGGVEVTK FASEMMSSSS SSAVEMLNLK EASNWWSDVN ESPIWQDRIF HVLAVLYGIV SLVAVIQLVR IQLRVPEYGW TTQKVFHFLN FVVNGVRAVV
101: FVFRRNVQFM QPEILQHILL DIPSLAFFTT YALLVLFWAE IYYQARAVST DGLRPSFFTI NAVVYVVQIA LWLVLWWKPV RVMVILSKMF FAGVSLFAAL
201: GFLLYGGRLF LMLQRFPVES KGRRKKLQEV GYVTTICFTC FLIRCIMMCF AAFDEGANLD VLDHPILNFI YYLLVEILPS SLVLFILRKL PPKRGITQYH
301: QIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)