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AT4G09320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18431481 (2008): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleoside diphosphate kinase family protein
Curator
Summary (TAIR10)
nucleoside diphosphate kinase type 1 (NDPK1) gene, complete
Computational
Description (TAIR10)
NDPK1; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: apoplast, peroxisome, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 3 (TAIR:AT4G11010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G09320-MONOMERBioCyc:MetaCyc:AT4G09320-MONOMERBioGrid:11814EC:2.7.4.6
eggNOG:COG0105eggNOG:KOG0888EMBL:AF017641EMBL:AF370529
EMBL:AL117386EMBL:AL161514EMBL:AY072518EMBL:CP002687
EMBL:X69373EMBL:X69376EMBL:Z18791EnsemblPlants:AT4G09320
EnsemblPlants:AT4G09320.1entrez:826515EvolutionaryTrace:P39207GeneID:826515
Genevisible:P39207GO:GO:0004550GO:GO:0005524GO:GO:0006165
GO:GO:0006183GO:GO:0006228GO:GO:0006241GO:GO:0046872
GO:GO:0070301Gramene:AT4G09320.1gramene_pathway:2.7.4.6gramene_pathway:DENOVOPURINE3-PWY
gramene_pathway:PWY-5687gramene_pathway:PWY0-166HAMAP:MF_00451hmmpanther:PTHR11349
HOGENOM:HOG000224564InParanoid:P39207IntAct:P39207InterPro:IPR001564
InterPro:IPR023005iPTMnet:P39207KEGG:00230+2.7.4.6KEGG:00240+2.7.4.6
KEGG:ath:AT4G09320KO:K00940PaxDb:P39207PDB:1U8W
PDBsum:1U8WPfam:P39207Pfam:PF00334PhylomeDB:P39207
PIR:S31444PIR:S31446PIR:T17131PRIDE:P39207
PRINTS:PR01243PRO:PR:P39207ProMEX:P39207PROSITE:PS00469
ProteinModelPortal:P39207Proteomes:UP000006548RefSeq:NP_567346.1scanprosite:PS00469
SMART:SM00562SMR:P39207STRING:3702.AT4G09320.1SUPFAM:SSF54919
SWISS-2DPAGE:P39207TAIR:AT4G09320tair10-symbols:NDPK1UniGene:At.5402
UniGene:At.75255UniProt:P39207
Coordinates (TAIR10) chr4:+:5923424..5924366
Molecular Weight (calculated) 18814.90 Da
IEP (calculated) 8.47
GRAVY (calculated) 0.01
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGLYINLFC LLRITSNKKT MEQTFIMIKP DGVQRGLIGE VICRFEKKGF TLKGLKLISV ERSFAEKHYE DLSSKSFFSG LVDYIVSGPV VAMIWEGKNV
101: VLTGRKIIGA TNPAASEPGT IRGDFAIDIG RNVIHGSDSV ESARKEIALW FPDGPVNWQS SVHPWVYET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)