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AT5G11170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEAD/DEAH box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus; EXPRESSED IN: guard cell, root, cultured cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT5G11200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1569-MONOMERBioCyc:ARA:GQT-1701-MONOMERBioCyc:ARA:GQT-1702-MONOMERBioGrid:16264
BioGrid:16268EC:3.6.4.13eggNOG:COG0513eggNOG:KOG0329
EMBL:AF378868EMBL:AL360314EMBL:AY059168EMBL:CP002688
EnsemblPlants:AT5G11170EnsemblPlants:AT5G11170.1EnsemblPlants:AT5G11200.1entrez:830986
entrez:830990ExpressionAtlas:Q9LFN6Gene3D:3.40.50.300GeneID:830986
GeneID:830990Genevisible:Q9LFN6GO:GO:0003723GO:GO:0004386
GO:GO:0005524GO:GO:0005634GO:GO:0006397GO:GO:0008380
GO:GO:0051028Gramene:AT5G11170.1Gramene:AT5G11200.1hmmpanther:PTHR24031
hmmpanther:PTHR24031:SF246InParanoid:Q56XG6InParanoid:Q9LFN6InterPro:IPR001650
InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417
KEGG:ath:AT5G11170PaxDb:Q9LFN6Pfam:PF00270Pfam:PF00271
Pfam:Q56XG6Pfam:Q9LFN6Pfscan:PS51192Pfscan:PS51194
Pfscan:PS51195PhylomeDB:Q9LFN6PRIDE:Q9LFN6PRO:PR:Q9LFN6
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9LFN6
Proteomes:UP000006548RefSeq:NP_568244.2RefSeq:NP_568245.1SMART:SM00487
SMART:SM00490SMR:Q9LFN6STRING:3702.AT5G11170.1SUPFAM:SSF52540
TAIR:AT5G11200UniGene:At.49007UniGene:At.73904UniProt:Q56XG6
UniProt:Q9LFN6
Coordinates (TAIR10) chr5:+:3553334..3556646
Molecular Weight (calculated) 48340.20 Da
IEP (calculated) 5.37
GRAVY (calculated) -0.27
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDARDNEAY EEELLDYEEE DEKVPDSGNK VNGEAVKKGY VGIHSSGFRD FLLKPELLRA IVDSGFEHPS EVQHECIPQA ILGMDVICQA KSGMGKTAVF
101: VLSTLQQIEP SPGQVSALVL CHTRELAYQI CNEFVRFSTY LPDTKVSVFY GGVNIKIHKD LLKNECPHIV VGTPGRVLAL AREKDLSLKN VRHFILDECD
201: KMLESLDMRR DVQEIFKMTP HDKQVMMFSA TLSKEIRPVC KKFMQDPMEI YVDDEAKLTL HGLVQHYIKL SEMEKNRKLN DLLDALDFNQ VVIFVKSVSR
301: AAELNKLLVE CNFPSICIHS GMSQEERLTR YKSFKEGHKR ILVATDLVGR GIDIERVNIV INYDMPDSAD TYLHRVGRAG RFGTKGLAIT FVASASDSEV
401: LNQVQERFEV DIKELPEQID TSTYMPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)