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AT3G53210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Walls Are Thin 1 (TAIR:AT1G75500.2); Has 4095 Blast hits to 4086 proteins in 629 species: Archae - 14; Bacteria - 1866; Metazoa - 4; Fungi - 0; Plants - 1246; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).
Protein Annotations
BioGrid:9804eggNOG:ENOG410JSR3eggNOG:ENOG41108JXEMBL:AL132958
EMBL:AY087537EMBL:CP002686EnsemblPlants:AT3G53210EnsemblPlants:AT3G53210.1
entrez:824487GeneID:824487Genevisible:F4J9A3GO:GO:0005886
GO:GO:0006810GO:GO:0016021GO:GO:0022857GO:GO:0055085
Gramene:AT3G53210.1hmmpanther:PTHR31218hmmpanther:PTHR31218:SF28HOGENOM:HOG000237441
InParanoid:F4J9A3InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT3G53210
OMA:MKWMFTYPANTHER:PTHR31218PaxDb:F4J9A3Pfam:F4J9A3
Pfam:PF00892PIR:T46167PRIDE:F4J9A3PRO:PR:F4J9A3
ProteinModelPortal:F4J9A3Proteomes:UP000006548RefSeq:NP_566981.1STRING:3702.AT3G53210.1
SUPFAM:0043518TAIR:AT3G53210TMHMM:TMhelixUniGene:At.35214
UniProt:F4J9A3
Coordinates (TAIR10) chr3:+:19720182..19721764
Molecular Weight (calculated) 40807.20 Da
IEP (calculated) 8.10
GRAVY (calculated) 0.44
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPIPERAKL HIAMVVFQTG YAGNHVIMRY ALNLGVSKLV FPLYRTIVAF SVLAPSAYFL EKKERPAMKI SFLIQFFLLG LVGITLNQGF YIFGLDNTSP
101: TFASATENVV PAVSFLMAAL LGIEKVEWKR KDGIAKVVGT IVSVAGSLVI TLYKGPTIYQ PSLNIVNQTI KPEEAEEENK NWTLGCLCLM GHCLCWSSWI
201: VLQSPLLKKY PARFSFVSYS CFFAVIQFFG ISAYFERDLE RWKIISGGEL YALLYTGLVG SAMVFAIQIY VVERGGPLFV SAYLPLQTLI AAVLATLALG
301: EHFYLGGLIG AILIMSGLYL VVMGKSWENQ ALCQQQQHMI SSAASDFGDE EDYHNNKPRS PISQPLISS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)