AT4G38020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17861568..17863010 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38462.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||
| Length | 352 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHCGCVFASQ TVSSLLPFEI KTYASKLRAS SAQLPRTQIQ INPSDDLSIY GSDKSPANRV SLPSHVNSIT STTNPFVKHC LKLRQSSSYR HAHGSVLVVG 101: TIPIREVCMF QTNKQGMTTE IECLLLHEEA KIPQGLESLS IRIVRVSSLV MKKLSGVQST ESVEAIALMR IPSSFTDLKD DKDIITDCNK WFPSAHRVLV 201: LDSIQDPGNL GTLVRSAMAF NWDGAFLLPG CCDPYNDKAL RASRGASFQL PIVSGNWNHL KLLENEFQMK LLAGHPATTT QKLKPVSKLS VEFAQSLAEK 301: PLCLILGSEG NGLSEQARKV CVLVSIPMAG DFESLNVSVA GGIFLYMLQN LV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)