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AT3G52580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S11 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S11 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT3G11510.1); Has 8774 Blast hits to 8774 proteins in 2899 species: Archae - 250; Bacteria - 4863; Metazoa - 589; Fungi - 162; Plants - 729; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).
Protein Annotations
BioGrid:9742eggNOG:COG0100eggNOG:KOG0407EMBL:AL050300
EMBL:AL353912EMBL:AY057592EMBL:AY088848EMBL:AY124833
EMBL:CP002686EMBL:Z17690EnsemblPlants:AT3G52580EnsemblPlants:AT3G52580.1
entrez:824424Gene3D:3.30.420.80GeneID:824424Genevisible:P42036
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT3G52580.1
HAMAP:MF_01310hmmpanther:PTHR11759hmmpanther:PTHR11759:SF12HOGENOM:HOG000111598
InParanoid:P42036IntAct:P42036InterPro:IPR001971InterPro:IPR018102
KEGG:ath:AT3G52580KO:K02955OMA:FTGFHIRPANTHER:PTHR11759
PaxDb:P42036Pfam:P42036Pfam:PF00411PhylomeDB:P42036
PIR:T08441PIRSF:PIRSF002131PRIDE:P42036PRO:PR:P42036
PROSITE:PS00054ProteinModelPortal:P42036Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_190826.1
scanprosite:PS00054SMR:P42036STRING:3702.AT3G52580.1SUPFAM:SSF53137
TAIR:AT3G52580UniGene:At.24693UniProt:P42036
Coordinates (TAIR10) chr3:+:19503324..19504701
Molecular Weight (calculated) 16238.70 Da
IEP (calculated) 11.30
GRAVY (calculated) -0.49
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)