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AT3G51030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin H-type 1
Curator
Summary (TAIR10)
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational
Description (TAIR10)
thioredoxin H-type 1 (TRX1); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 18017 Blast hits to 17697 proteins in 2965 species: Archae - 232; Bacteria - 9905; Metazoa - 1876; Fungi - 909; Plants - 1960; Viruses - 5; Other Eukaryotes - 3130 (source: NCBI BLink).
Protein Annotations
DNASU:824267eggNOG:COG0526eggNOG:KOG0907EMBL:AL132980
EMBL:AY088687EMBL:CP002686EMBL:U35827EMBL:Z14084
EnsemblPlants:AT3G51030EnsemblPlants:AT3G51030.1entrez:824267EvolutionaryTrace:P29448
Gene3D:3.40.30.10GeneID:824267Genevisible:P29448GO:GO:0000103
GO:GO:0005829GO:GO:0005886GO:GO:0006457GO:GO:0006662
GO:GO:0008047GO:GO:0015035GO:GO:0016671GO:GO:0034599
GO:GO:0043085GO:GO:0045454GO:GO:0048046Gramene:AT3G51030.1
hmmpanther:PTHR10438hmmpanther:PTHR10438:SF274HOGENOM:HOG000292977InParanoid:P29448
IntAct:P29448InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766
InterPro:IPR017937KEGG:ath:AT3G51030KO:K03671OMA:EDIAMDY
PANTHER:PTHR10438PaxDb:P29448PDB:1XFLPDBsum:1XFL
Pfam:P29448Pfam:PF00085Pfscan:PS51352PhylomeDB:P29448
PIR:JQ2242PIRSF:PIRSF000077PRIDE:P29448PRO:PR:P29448
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:P29448Proteomes:UP000006548
RefSeq:NP_190672.1scanprosite:PS00194SMR:P29448STRING:3702.AT3G51030.1
SUPFAM:SSF52833TAIR:AT3G51030tair10-symbols:ATTRX H1tair10-symbols:ATTRX1
tair10-symbols:TRX1UniGene:At.193UniProt:P29448
Coordinates (TAIR10) chr3:-:18951123..18951955
Molecular Weight (calculated) 12673.40 Da
IEP (calculated) 5.73
GRAVY (calculated) 0.03
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)