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AT5G16490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ROP-interactive CRIB motif-containing protein 4
Curator
Summary (TAIR10)
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly.
Computational
Description (TAIR10)
ROP-interactive CRIB motif-containing protein 4 (RIC4); CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 10 (TAIR:AT4G04900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16786eggNOG:ENOG410J28UeggNOG:ENOG4111EEDEMBL:AB005242
EMBL:AK176878EMBL:BT010523EMBL:CP002688EnsemblPlants:AT5G16490
EnsemblPlants:AT5G16490.1entrez:831510Gene3D:3.90.810.10GeneID:831510
Genevisible:Q9FFD5GO:GO:0005886GO:GO:0007275GO:GO:0009860
GO:GO:0010215GO:GO:0016324GO:GO:0017157GO:GO:0030833
GO:GO:0040008GO:GO:0051650Gramene:AT5G16490.1hmmpanther:PTHR23177
hmmpanther:PTHR23177:SF23HOGENOM:HOG000029045InParanoid:Q9FFD5IntAct:Q9FFD5
InterPro:IPR000095KEGG:ath:AT5G16490OMA:GFKNFSQPaxDb:Q9FFD5
Pfam:PF00786Pfam:Q9FFD5Pfscan:PS50108PhylomeDB:Q9FFD5
PRIDE:Q9FFD5PRO:PR:Q9FFD5PROSITE:PS50108ProteinModelPortal:Q9FFD5
Proteomes:UP000006548RefSeq:NP_197153.1SMR:Q9FFD5STRING:3702.AT5G16490.1
TAIR:AT5G16490tair10-symbols:RIC4TMHMM:TMhelixUniGene:At.31670
UniProt:Q9FFD5
Coordinates (TAIR10) chr5:-:5384468..5385205
Molecular Weight (calculated) 17013.50 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.30
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDRMERLVV LPFSIGCISV SSVAVLSPLS KPHHHHSRQV IREQEEEDNM KNVFKFLAVS KPEISIGINR IFKSFKTISQ LFADKDEEKE EVETSGMEIG
101: VPTNVKHVSH IGWESGLTAA TGPGKGWEDL IPPELLAAAA SKKEINPHLH PTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)