AT2G42770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 ASURE: peroxisome What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisomal membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT5G43140.1); Has 1184 Blast hits to 1184 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 462; Fungi - 330; Plants - 259; Viruses - 11; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17798635..17799927 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25917.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 232 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDALGGCGGA GGFWGWNGFD QRRKKKSSGD RGKKRNSGSS DSVDVSRDAG GYRFPLKQAV TAGALTFTGD TIAQLSGRWK KRTALKQSSS ELDEGELWNI 101: FSEHDWIRAL RMSSYGFLLY GPGSYAWYQF LDHSLPKPTA TNLVLKVLLN QVILGPSVIA VIFAWNNLWL GKLSELGNKY QKDALPTLLY GFRFWVPVSI 201: LNFWVVPLQA RVAFMSMGSV FWNFYLSSTM SK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)