AT3G11945.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : homogentisate prenyltransferase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
homogentisate prenyltransferase (HST); FUNCTIONS IN: homogentisate geranylgeranyltransferase activity, homogentisate farnesyltransferase activity, dimethylallyltranstransferase activity, homogentisate solanesyltransferase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate phytyltransferase 1 (TAIR:AT2G18950.1); Has 1360 Blast hits to 1357 proteins in 372 species: Archae - 250; Bacteria - 602; Metazoa - 1; Fungi - 4; Plants - 187; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3780041..3782880 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42843.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.61 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.54 | ||||||||||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELSISQSPR VRFSSLAPRF LAASHHHRPS VHLAGKFISL PRDVRFTSLS TSRMRSKFVS TNYRKISIRA CSQVGAAESD DPVLDRIARF QNACWRFLRP 101: HTIRGTALGS TALVTRALIE NTHLIKWSLV LKALSGLLAL ICGNGYIVGI NQIYDIGIDK VNKPYLPIAA GDLSVQSAWL LVIFFAIAGL LVVGFNFGPF 201: ITSLYSLGLF LGTIYSVPPL RMKRFPVAAF LIIATVRGFL LNFGVYHATR AALGLPFQWS APVAFITSFV TLFALVIAIT KDLPDVEGDR KFQISTLATK 301: LGVRNIAFLG SGLLLVNYVS AISLAFYMPQ VFRGSLMIPA HVILASGLIF QTWVLEKANY TKEAISGYYR FIWNLFYAEY LLFPFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)