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AT1G69850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nitrate transporter 1:2
Curator
Summary (TAIR10)
Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.
Computational
Description (TAIR10)
nitrate transporter 1:2 (NRT1:2); FUNCTIONS IN: transporter activity, calcium ion binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G27040.1); Has 5870 Blast hits to 5639 proteins in 1033 species: Archae - 0; Bacteria - 2327; Metazoa - 503; Fungi - 400; Plants - 2186; Viruses - 0; Other Eukaryotes - 454 (source: NCBI BLink).
Protein Annotations
BioGrid:28542eggNOG:COG3104eggNOG:KOG1237EMBL:AC010675
EMBL:AF073361EMBL:AY062453EMBL:BT000720EMBL:BT002561
EMBL:CP002684EnsemblPlants:AT1G69850EnsemblPlants:AT1G69850.1entrez:843321
GeneID:843321Genevisible:Q8H157GO:GO:0005886GO:GO:0009624
GO:GO:0010119GO:GO:0015293GO:GO:0016021GO:GO:0042128
GO:GO:0080168GO:GO:0090440Gramene:AT1G69850.1hmmpanther:PTHR11654
hmmpanther:PTHR11654:SF98HOGENOM:HOG000237400InParanoid:Q8H157IntAct:Q8H157
InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT1G69850OMA:CKPGDIC
PANTHER:PTHR11654PaxDb:Q8H157Pfam:PF00854Pfam:Q8H157
PhylomeDB:Q8H157PIR:T51361PRIDE:Q8H157PRO:PR:Q8H157
ProteinModelPortal:Q8H157Proteomes:UP000006548RefSeq:NP_564978.1SMR:Q8H157
STRING:3702.AT1G69850.1SUPFAM:SSF103473TAIR:AT1G69850tair10-symbols:ATNRT1:2
tair10-symbols:NRT1:2tair10-symbols:NTL1TCDB:2.A.17.3.16TMHMM:TMhelix
UniGene:At.21144UniProt:Q8H157
Coordinates (TAIR10) chr1:-:26296945..26300407
Molecular Weight (calculated) 63985.30 Da
IEP (calculated) 8.66
GRAVY (calculated) 0.37
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVEEEVSRW EGYADWRNRA AVKGRHGGML AASFVLVVEI LENLAYLANA SNLVLYLREY MHMSPSKSAN DVTNFMGTAF LLALLGGFLS DAFFSTFQIF
101: LISASIEFLG LIILTIQART PSLMPPSCDS PTCEEVSGSK AAMLFVGLYL VALGVGGIKG SLASHGAEQF DESTPKGRKQ RSTFFNYFVF CLACGALVAV
201: TFVVWLEDNK GWEWGFGVST IAIFVSILIF LSGSRFYRNK IPCGSPLTTI LKVLLAASVK CCSSGSSSNA VASMSVSPSN HCVSKGKKEV ESQGELEKPR
301: QEEALPPRAQ LTNSLKVLNG AADEKPVHRL LECTVQQVED VKIVLKMLPI FACTIMLNCC LAQLSTFSVQ QAASMNTKIG SLKIPPASLP IFPVVFIMIL
401: APIYDHLIIP FARKATKTET GVTHLQRIGV GLVLSILAMA VAALVEIKRK GVAKDSGLLD SKETLPVTFL WIALQYLFLG SADLFTLAGL LEYFFTEAPS
501: SMRSLATSLS WASLAMGYYL SSVIVSIVNS ITGSSGNTPW LRGKSINRYK LDYFYWLMCV LSAANFLHYL FWAMRYKYRS TGSRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)