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AT2G31110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.714
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828)
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 40 (TBL40); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 39 (TAIR:AT2G42570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWIZeggNOG:ENOG41104VYEMBL:AC005311EMBL:AK176895
EMBL:AY087549EMBL:BT004296EMBL:CP002685EnsemblPlants:AT2G31110
EnsemblPlants:AT2G31110.1EnsemblPlants:AT2G31110.2entrez:817667ExpressionAtlas:Q67XC4
GeneID:817667Genevisible:Q67XC4GO:GO:0016021hmmpanther:PTHR32285
hmmpanther:PTHR32285:SF71HOGENOM:HOG000238066InterPro:IPR025846InterPro:IPR026057
InterPro:IPR029962KEGG:ath:AT2G31110OMA:FRWQPFSPANTHER:PTHR32285
PaxDb:Q67XC4Pfam:PF13839Pfam:PF14416PIR:F84716
PRIDE:Q67XC4PRO:PR:Q67XC4Proteomes:UP000006548RefSeq:NP_001077985.1
RefSeq:NP_180669.2TAIR:AT2G31110tair10-symbols:TBL40UniGene:At.48534
UniProt:F4IPX5UniProt:O82273
Coordinates (TAIR10) chr2:-:13258522..13259463
Molecular Weight (calculated) 25077.00 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.39
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVKPKEKDY GVTINLYRTQ FLVDVVQEKA GRVLVLDSIK QADAWLGMDV LIFNSWHWWT HTSGLQPWDY MREGNQLYKD MNRLVAYYKG LNTWARWINN
101: NIVPSRTQVF FQGVSPVHYD GREWNEPLKS CNGQTQPFMG QRYPGGLPLG WVVVNKVLSR IRKPVHLLDL TTLSEYRKDA HPSLYNGISK DLDCSHWCLP
201: GLPDTWNLLL YSSLTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)